Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACM6AC_RS10050 | Genome accession | NZ_CP181150 |
| Coordinates | 2033548..2034018 (-) | Length | 156 a.a. |
| NCBI ID | WP_416152360.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain AG21-0600 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2004249..2054531 | 2033548..2034018 | within | 0 |
Gene organization within MGE regions
Location: 2004249..2054531
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACM6AC_RS09835 (ACM6AC_09835) | scn | 2004249..2004599 (-) | 351 | WP_000702263.1 | complement inhibitor SCIN-A | - |
| ACM6AC_RS09840 (ACM6AC_09840) | - | 2005284..2005733 (+) | 450 | WP_000727649.1 | chemotaxis-inhibiting protein CHIPS | - |
| ACM6AC_RS09845 (ACM6AC_09845) | - | 2005828..2006166 (-) | 339 | Protein_1900 | SH3 domain-containing protein | - |
| ACM6AC_RS09850 (ACM6AC_09850) | sak | 2006813..2007304 (-) | 492 | WP_000919350.1 | staphylokinase | - |
| ACM6AC_RS09855 (ACM6AC_09855) | - | 2007495..2008250 (-) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| ACM6AC_RS09860 (ACM6AC_09860) | - | 2008262..2008516 (-) | 255 | WP_000611512.1 | phage holin | - |
| ACM6AC_RS09865 (ACM6AC_09865) | - | 2008568..2008675 (+) | 108 | WP_001791821.1 | hypothetical protein | - |
| ACM6AC_RS09870 (ACM6AC_09870) | pepG1 | 2008728..2008862 (-) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| ACM6AC_RS09875 (ACM6AC_09875) | - | 2009054..2009350 (-) | 297 | WP_000539688.1 | DUF2951 domain-containing protein | - |
| ACM6AC_RS09880 (ACM6AC_09880) | - | 2009408..2009695 (-) | 288 | WP_001040261.1 | hypothetical protein | - |
| ACM6AC_RS09885 (ACM6AC_09885) | - | 2009742..2009894 (-) | 153 | WP_001153681.1 | hypothetical protein | - |
| ACM6AC_RS09890 (ACM6AC_09890) | - | 2009884..2013669 (-) | 3786 | WP_000582165.1 | phage tail spike protein | - |
| ACM6AC_RS09895 (ACM6AC_09895) | - | 2013685..2015169 (-) | 1485 | WP_000567408.1 | phage distal tail protein | - |
| ACM6AC_RS09900 (ACM6AC_09900) | - | 2015166..2019707 (-) | 4542 | WP_416152359.1 | phage tail tape measure protein | - |
| ACM6AC_RS09905 (ACM6AC_09905) | gpGT | 2019764..2019901 (-) | 138 | WP_001549167.1 | phage tail assembly chaperone GT | - |
| ACM6AC_RS09910 (ACM6AC_09910) | gpG | 2019952..2020302 (-) | 351 | WP_001096355.1 | phage tail assembly chaperone G | - |
| ACM6AC_RS09915 (ACM6AC_09915) | - | 2020352..2020576 (-) | 225 | WP_071621395.1 | Ig-like domain-containing protein | - |
| ACM6AC_RS09920 (ACM6AC_09920) | - | 2020618..2021262 (-) | 645 | WP_000268733.1 | major tail protein | - |
| ACM6AC_RS09925 (ACM6AC_09925) | - | 2021263..2021670 (-) | 408 | WP_000565498.1 | hypothetical protein | - |
| ACM6AC_RS09930 (ACM6AC_09930) | - | 2021667..2022071 (-) | 405 | WP_000114227.1 | HK97 gp10 family phage protein | - |
| ACM6AC_RS09935 (ACM6AC_09935) | - | 2022068..2022430 (-) | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| ACM6AC_RS09940 (ACM6AC_09940) | - | 2022414..2022698 (-) | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| ACM6AC_RS09945 (ACM6AC_09945) | - | 2022688..2022972 (-) | 285 | WP_000238236.1 | hypothetical protein | - |
| ACM6AC_RS09950 (ACM6AC_09950) | - | 2022992..2024137 (-) | 1146 | WP_000154559.1 | phage major capsid protein | - |
| ACM6AC_RS09955 (ACM6AC_09955) | - | 2024161..2024898 (-) | 738 | WP_000642728.1 | head maturation protease, ClpP-related | - |
| ACM6AC_RS09960 (ACM6AC_09960) | - | 2024882..2026069 (-) | 1188 | WP_000025274.1 | phage portal protein | - |
| ACM6AC_RS09965 (ACM6AC_09965) | - | 2026085..2027746 (-) | 1662 | Protein_1924 | terminase large subunit domain-containing protein | - |
| ACM6AC_RS09970 (ACM6AC_09970) | - | 2027743..2028087 (-) | 345 | WP_000402904.1 | hypothetical protein | - |
| ACM6AC_RS09975 (ACM6AC_09975) | - | 2028216..2028515 (-) | 300 | WP_000988336.1 | HNH endonuclease | - |
| ACM6AC_RS09980 (ACM6AC_09980) | - | 2028747..2029163 (-) | 417 | WP_000590122.1 | hypothetical protein | - |
| ACM6AC_RS09985 (ACM6AC_09985) | - | 2029191..2029391 (-) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| ACM6AC_RS09990 (ACM6AC_09990) | rinB | 2029391..2029540 (-) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| ACM6AC_RS09995 (ACM6AC_09995) | - | 2029537..2029923 (-) | 387 | WP_000592207.1 | hypothetical protein | - |
| ACM6AC_RS10000 (ACM6AC_10000) | - | 2029920..2030126 (-) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| ACM6AC_RS10005 (ACM6AC_10005) | - | 2030123..2030368 (-) | 246 | WP_001282074.1 | hypothetical protein | - |
| ACM6AC_RS10010 (ACM6AC_10010) | - | 2030405..2030941 (-) | 537 | WP_001066447.1 | dUTP diphosphatase | - |
| ACM6AC_RS10015 (ACM6AC_10015) | - | 2030934..2031104 (-) | 171 | WP_000714403.1 | hypothetical protein | - |
| ACM6AC_RS10020 (ACM6AC_10020) | - | 2031091..2031345 (-) | 255 | WP_001065097.1 | DUF1024 family protein | - |
| ACM6AC_RS10025 (ACM6AC_10025) | - | 2031360..2031602 (-) | 243 | WP_000131370.1 | SAV1978 family virulence-associated passenger protein | - |
| ACM6AC_RS10030 (ACM6AC_10030) | - | 2031606..2031974 (-) | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| ACM6AC_RS10035 (ACM6AC_10035) | - | 2031987..2032391 (-) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ACM6AC_RS10040 (ACM6AC_10040) | - | 2032400..2032618 (-) | 219 | WP_000338530.1 | hypothetical protein | - |
| ACM6AC_RS10045 (ACM6AC_10045) | - | 2032625..2033518 (-) | 894 | WP_000148321.1 | DnaD domain protein | - |
| ACM6AC_RS10050 (ACM6AC_10050) | ssbA | 2033548..2034018 (-) | 471 | WP_416152360.1 | single-stranded DNA-binding protein | Machinery gene |
| ACM6AC_RS10055 (ACM6AC_10055) | - | 2034019..2034636 (-) | 618 | WP_071665632.1 | MBL fold metallo-hydrolase | - |
| ACM6AC_RS10060 (ACM6AC_10060) | - | 2034717..2035637 (-) | 921 | WP_000138475.1 | recombinase RecT | - |
| ACM6AC_RS10065 (ACM6AC_10065) | - | 2035639..2037582 (-) | 1944 | WP_416152361.1 | AAA family ATPase | - |
| ACM6AC_RS10070 (ACM6AC_10070) | - | 2037591..2037854 (-) | 264 | WP_416152362.1 | hypothetical protein | - |
| ACM6AC_RS10075 (ACM6AC_10075) | - | 2037863..2038123 (-) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| ACM6AC_RS10080 (ACM6AC_10080) | - | 2038128..2038430 (-) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| ACM6AC_RS10085 (ACM6AC_10085) | - | 2038525..2038686 (-) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| ACM6AC_RS10090 (ACM6AC_10090) | - | 2038683..2039006 (-) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| ACM6AC_RS10095 (ACM6AC_10095) | - | 2039061..2039441 (+) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| ACM6AC_RS10100 (ACM6AC_10100) | - | 2039428..2039625 (-) | 198 | WP_001148862.1 | hypothetical protein | - |
| ACM6AC_RS10105 (ACM6AC_10105) | - | 2039641..2040393 (-) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| ACM6AC_RS10110 (ACM6AC_10110) | - | 2040444..2040773 (+) | 330 | WP_000128907.1 | hypothetical protein | - |
| ACM6AC_RS10115 (ACM6AC_10115) | - | 2040762..2040977 (-) | 216 | WP_001025404.1 | Thoeris anti-defense Tad2 family protein | - |
| ACM6AC_RS10120 (ACM6AC_10120) | - | 2040993..2041256 (-) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| ACM6AC_RS10125 (ACM6AC_10125) | - | 2041253..2041426 (-) | 174 | WP_001801500.1 | hypothetical protein | - |
| ACM6AC_RS10130 (ACM6AC_10130) | - | 2041389..2042102 (+) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| ACM6AC_RS10135 (ACM6AC_10135) | - | 2042118..2043050 (+) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| ACM6AC_RS10140 (ACM6AC_10140) | - | 2043056..2043397 (+) | 342 | WP_000591749.1 | hypothetical protein | - |
| ACM6AC_RS10145 (ACM6AC_10145) | - | 2043601..2043783 (+) | 183 | WP_000705248.1 | hypothetical protein | - |
| ACM6AC_RS10150 (ACM6AC_10150) | - | 2043883..2044347 (+) | 465 | WP_000825947.1 | hypothetical protein | - |
| ACM6AC_RS10155 (ACM6AC_10155) | - | 2044406..2045443 (+) | 1038 | WP_000857191.1 | tyrosine-type recombinase/integrase | - |
| ACM6AC_RS10160 (ACM6AC_10160) | sph | 2045500..2046326 (+) | 827 | Protein_1963 | sphingomyelin phosphodiesterase | - |
| ACM6AC_RS10165 (ACM6AC_10165) | - | 2046583..2047602 (-) | 1020 | WP_154283943.1 | leukocidin/hemolysin toxin family protein | - |
| ACM6AC_RS10170 (ACM6AC_10170) | - | 2047624..2048679 (-) | 1056 | WP_154283942.1 | leukocidin family pore-forming toxin | - |
| ACM6AC_RS10175 (ACM6AC_10175) | - | 2049111..2050334 (+) | 1224 | WP_154283941.1 | ArgE/DapE family deacylase | - |
| ACM6AC_RS10180 (ACM6AC_10180) | - | 2050717..2052024 (+) | 1308 | WP_154283940.1 | TrkH family potassium uptake protein | - |
| ACM6AC_RS10185 (ACM6AC_10185) | groL | 2052555..2054171 (-) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| ACM6AC_RS10190 (ACM6AC_10190) | groES | 2054247..2054531 (-) | 285 | WP_000917289.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17588.47 Da Isoelectric Point: 4.9431
>NTDB_id=1099182 ACM6AC_RS10050 WP_416152360.1 2033548..2034018(-) (ssbA) [Staphylococcus aureus strain AG21-0600]
MLNRTILVGCLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MLNRTILVGCLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1099182 ACM6AC_RS10050 WP_416152360.1 2033548..2034018(-) (ssbA) [Staphylococcus aureus strain AG21-0600]
ATGCTAAACAGAACAATATTAGTTGGTTGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTTGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50 |
100 |
0.545 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
67.949 |
0.397 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |