Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ACGHTT_RS10100 Genome accession   NZ_AP031497
Coordinates   2266568..2266879 (-) Length   103 a.a.
NCBI ID   WP_390590362.1    Uniprot ID   -
Organism   Simiduia litorea strain KMM 9504     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2261568..2271879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHTT_RS10075 (R50072_19950) - 2261694..2262818 (-) 1125 WP_390590357.1 tetratricopeptide repeat protein -
  ACGHTT_RS10080 (R50072_19960) - 2262878..2263162 (-) 285 WP_390590358.1 LapA family protein -
  ACGHTT_RS10085 (R50072_19970) ihfB 2263165..2263524 (-) 360 WP_390590359.1 integration host factor subunit beta -
  ACGHTT_RS10090 (R50072_19980) rpsA 2263838..2265526 (-) 1689 WP_390590360.1 30S ribosomal protein S1 -
  ACGHTT_RS10095 (R50072_19990) cmk 2265705..2266373 (-) 669 WP_390590361.1 (d)CMP kinase -
  ACGHTT_RS10100 (R50072_20000) comEA/comE1 2266568..2266879 (-) 312 WP_390590362.1 ComEA family DNA-binding protein Machinery gene
  ACGHTT_RS10105 (R50072_20010) - 2267220..2267426 (-) 207 WP_390590363.1 DUF2788 domain-containing protein -
  ACGHTT_RS10115 (R50072_20020) - 2267704..2268066 (-) 363 WP_390590364.1 MerR family transcriptional regulator -
  ACGHTT_RS10120 (R50072_20030) ihfA 2268050..2268355 (-) 306 WP_290263762.1 integration host factor subunit alpha -
  ACGHTT_RS10125 (R50072_20040) pheT 2268382..2270766 (-) 2385 WP_390590365.1 phenylalanine--tRNA ligase subunit beta -
  ACGHTT_RS10130 (R50072_20050) pheS 2270856..2271869 (-) 1014 WP_390590366.1 phenylalanine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11019.05 Da        Isoelectric Point: 10.6866

>NTDB_id=109904 ACGHTT_RS10100 WP_390590362.1 2266568..2266879(-) (comEA/comE1) [Simiduia litorea strain KMM 9504]
MRIQRIPMFALILLLSFFGSFSSLTYASADAKVIATQTALVNINTASAEELAQKLKGVGMSKAKAIVEYRAKVGKFITVD
QLAEVKGIGAATIEKNRAAISLK

Nucleotide


Download         Length: 312 bp        

>NTDB_id=109904 ACGHTT_RS10100 WP_390590362.1 2266568..2266879(-) (comEA/comE1) [Simiduia litorea strain KMM 9504]
ATGCGTATTCAACGCATTCCAATGTTCGCGCTCATCCTGTTGCTTTCTTTTTTTGGTTCCTTTTCGTCGCTTACTTATGC
GTCTGCAGATGCAAAAGTTATCGCGACGCAAACGGCTTTGGTCAATATCAATACTGCTTCGGCGGAGGAGTTGGCACAAA
AGCTAAAGGGGGTTGGCATGTCAAAAGCTAAAGCTATTGTCGAGTATCGGGCAAAAGTAGGTAAGTTCATTACCGTTGAT
CAGCTGGCTGAAGTGAAGGGTATTGGTGCCGCCACTATTGAAAAAAACAGGGCGGCTATTTCCCTTAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(40-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

45.133

100

0.495
  comEA Vibrio cholerae C6706

61.29

60.194

0.369
  comEA Vibrio cholerae strain A1552

61.29

60.194

0.369

Multiple sequence alignment