Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACGHM3_RS20670 Genome accession   NZ_AP031496
Coordinates   4853665..4854252 (-) Length   195 a.a.
NCBI ID   WP_345427009.1    Uniprot ID   A0AAV3U812
Organism   Halioxenophilus aromaticivorans strain KU68F     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 4841980..4854252 4853665..4854252 within 0


Gene organization within MGE regions


Location: 4841980..4854252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHM3_RS20630 (R50071_41110) - 4841980..4842957 (-) 978 WP_345427025.1 AAA family ATPase -
  ACGHM3_RS20635 (R50071_41120) - 4843137..4845611 (-) 2475 WP_345427023.1 sigma factor-like helix-turn-helix DNA-binding protein -
  ACGHM3_RS20640 (R50071_41130) - 4845616..4847811 (-) 2196 WP_345427021.1 DEAD/DEAH box helicase family protein -
  ACGHM3_RS20645 (R50071_41140) - 4847886..4848125 (-) 240 WP_345427019.1 transcription factor -
  ACGHM3_RS20650 (R50071_41150) - 4848215..4848670 (-) 456 WP_345427018.1 hypothetical protein -
  ACGHM3_RS20655 (R50071_41160) - 4848684..4850684 (-) 2001 WP_345427015.1 hypothetical protein -
  ACGHM3_RS20660 - 4850677..4852275 (-) 1599 WP_345427013.1 tyrosine-type recombinase/integrase -
  ACGHM3_RS20665 - 4852272..4853447 (-) 1176 WP_345427011.1 tyrosine-type recombinase/integrase -
  ACGHM3_RS20670 (R50071_41190) ssb 4853665..4854252 (-) 588 WP_345427009.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 20780.93 Da        Isoelectric Point: 5.9123

>NTDB_id=109887 ACGHM3_RS20670 WP_345427009.1 4853665..4854252(-) (ssb) [Halioxenophilus aromaticivorans strain KU68F]
MARGINKVILVGNCGQDPETKYMPSGGAVTNLSIATSETWKDKQTGQPQERTEWHRVVFFNRLAEIAGEYLRKGSQVYVE
GSLRTRKWQDQSGQDRYSTEIVANEMQMLGGRTEAAAGQVRPAQGGYGNQGGMNQGGVNQGGPQGGGMAPPMNQGAPAQG
GGYGGGQAPASRPQQPPQQPQQPPGMDSFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=109887 ACGHM3_RS20670 WP_345427009.1 4853665..4854252(-) (ssb) [Halioxenophilus aromaticivorans strain KU68F]
ATGGCGCGTGGCATTAATAAGGTTATTCTTGTGGGTAACTGCGGCCAAGACCCGGAAACCAAATACATGCCCAGTGGTGG
TGCGGTAACCAATTTAAGCATTGCCACCAGCGAAACCTGGAAGGACAAACAAACCGGCCAGCCGCAGGAGCGCACGGAGT
GGCACCGTGTGGTGTTTTTCAATCGCCTGGCGGAAATTGCCGGAGAGTACCTACGCAAGGGCTCCCAGGTGTATGTTGAA
GGCAGCCTGCGCACCCGCAAGTGGCAAGATCAATCTGGCCAAGATCGCTACAGCACCGAAATTGTTGCTAACGAAATGCA
AATGTTGGGTGGCCGCACCGAAGCCGCCGCCGGACAAGTGCGCCCCGCACAGGGCGGCTACGGCAATCAGGGCGGTATGA
ATCAAGGTGGCGTGAACCAAGGCGGCCCGCAGGGTGGCGGTATGGCTCCACCTATGAATCAAGGCGCCCCGGCCCAAGGT
GGTGGTTACGGCGGTGGGCAGGCTCCAGCAAGCCGTCCCCAACAGCCGCCGCAGCAGCCTCAACAGCCTCCGGGCATGGA
TTCCTTCGACGACGATATCCCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.825

100

0.59
  ssb Glaesserella parasuis strain SC1401

52.577

99.487

0.523
  ssb Neisseria meningitidis MC58

44.162

100

0.446
  ssb Neisseria gonorrhoeae MS11

44.162

100

0.446

Multiple sequence alignment