Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACGHM3_RS01960 Genome accession   NZ_AP031496
Coordinates   406485..407552 (+) Length   355 a.a.
NCBI ID   WP_345419217.1    Uniprot ID   A0AAV3U024
Organism   Halioxenophilus aromaticivorans strain KU68F     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 401485..412552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHM3_RS01950 (R50071_03880) rpmE 403387..403599 (+) 213 WP_345419210.1 50S ribosomal protein L31 -
  ACGHM3_RS01955 (R50071_03890) - 403688..406330 (-) 2643 WP_345419213.1 penicillin-binding protein 1A -
  ACGHM3_RS01960 (R50071_03900) comM 406485..407552 (+) 1068 WP_345419217.1 pilus assembly protein PilM Machinery gene
  ACGHM3_RS01965 (R50071_03910) - 407552..408124 (+) 573 WP_345419220.1 PilN domain-containing protein -
  ACGHM3_RS01970 (R50071_03920) - 408124..408729 (+) 606 WP_345419222.1 type 4a pilus biogenesis protein PilO -
  ACGHM3_RS01975 (R50071_03930) - 408741..409307 (+) 567 WP_345419225.1 pilus assembly protein PilP -
  ACGHM3_RS01980 (R50071_03940) - 409311..411464 (+) 2154 WP_345419228.1 type IV pilus secretin PilQ family protein -
  ACGHM3_RS01985 (R50071_03950) aroK 411481..412008 (+) 528 WP_345419232.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38339.63 Da        Isoelectric Point: 4.2792

>NTDB_id=109867 ACGHM3_RS01960 WP_345419217.1 406485..407552(+) (comM) [Halioxenophilus aromaticivorans strain KU68F]
MGILGIFESKPKPVLGLDISSTAIKLVELSRQGSGYRVESYAVRPLPPNAVVEKNINEVEAVAEVLRNLVVLGKTKIKNS
AVAVSGSAVITKNIEMPSGLSDDALETQITLEADQYIPYPLEEVALDFEVQGSSATTEGQVDVLLAACRREHVDLRVEVL
EQAGLEAKIIDVEAFTMERAFGLIADQLEEHDDQVIAIVDVGATMTTLSVLVSGKTVYTREQLFGGKQLTEEIQRRYGLS
TEEAGLAKKQGGLPDDYQLEVLEPFKEAVVQQVTRSLQFFFSSSQYNDVDHIVLAGGVATLEGLADLVEEKLGTQTTVAN
PFAKMSVSSRVNSVNLANDAPALMIAVGLALRSFE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=109867 ACGHM3_RS01960 WP_345419217.1 406485..407552(+) (comM) [Halioxenophilus aromaticivorans strain KU68F]
ATGGGTATTCTCGGTATCTTTGAAAGCAAGCCAAAACCGGTGCTGGGGCTGGACATCAGCTCCACCGCCATCAAGCTTGT
AGAGCTAAGCCGGCAAGGAAGCGGCTATCGTGTAGAAAGCTACGCGGTACGCCCATTGCCGCCCAATGCTGTGGTGGAAA
AAAACATCAACGAGGTGGAGGCCGTAGCCGAAGTGCTGCGCAACCTGGTGGTGTTGGGTAAAACCAAAATTAAGAATTCC
GCAGTGGCGGTATCTGGCTCGGCGGTCATCACTAAGAATATCGAAATGCCCAGTGGCTTATCAGACGATGCGCTGGAAAC
CCAGATCACCCTAGAAGCCGACCAGTACATTCCATACCCCTTAGAAGAGGTTGCCTTGGACTTTGAAGTTCAAGGCTCCT
CGGCCACCACCGAAGGCCAAGTCGATGTGTTGCTGGCGGCCTGCCGCCGTGAGCACGTTGATTTGCGAGTTGAGGTTTTG
GAGCAGGCAGGCTTGGAAGCCAAAATCATCGACGTTGAAGCCTTCACCATGGAGCGTGCCTTTGGCCTGATCGCGGATCA
GCTTGAGGAGCATGATGATCAAGTCATCGCCATTGTGGATGTGGGTGCCACCATGACCACCCTCAGCGTGCTGGTAAGCG
GCAAAACCGTGTACACCCGCGAGCAGTTGTTTGGTGGTAAGCAGTTGACTGAAGAAATCCAGCGCCGCTACGGGTTATCC
ACCGAAGAGGCCGGCTTAGCCAAGAAGCAGGGCGGCCTGCCGGATGACTACCAGCTTGAAGTATTAGAGCCTTTCAAAGA
GGCGGTAGTGCAACAGGTTACCCGCTCACTGCAGTTCTTCTTTTCCTCCAGCCAGTATAACGACGTTGACCACATTGTGT
TGGCCGGCGGTGTTGCTACCTTGGAAGGCTTGGCCGACTTGGTGGAGGAGAAGCTGGGCACTCAAACCACCGTGGCCAAC
CCGTTTGCCAAGATGTCGGTGTCGTCTCGGGTGAACTCCGTCAATTTAGCCAACGATGCCCCGGCGCTGATGATTGCCGT
TGGTCTGGCTTTGAGGAGCTTCGAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(16-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

55.524

99.437

0.552
  pilM Acinetobacter baumannii D1279779

55.241

99.437

0.549
  comM Acinetobacter baylyi ADP1

53.541

99.437

0.532
  pilM Legionella pneumophila strain ERS1305867

45.763

99.718

0.456

Multiple sequence alignment