Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABXS89_RS13395 Genome accession   NZ_AP031495
Coordinates   2868703..2869758 (-) Length   351 a.a.
NCBI ID   WP_062845501.1    Uniprot ID   -
Organism   Psychrobacter alimentarius strain Psys_23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2863703..2874758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS89_RS13375 (Psyaliredsea_29350) pilQ 2864382..2866739 (-) 2358 WP_353670475.1 type IV pilus secretin PilQ -
  ABXS89_RS13380 (Psyaliredsea_29360) - 2866772..2867299 (-) 528 WP_353670476.1 pilus assembly protein PilP -
  ABXS89_RS13385 (Psyaliredsea_29370) pilO 2867299..2868069 (-) 771 WP_353670477.1 type 4a pilus biogenesis protein PilO -
  ABXS89_RS13390 (Psyaliredsea_29380) - 2868032..2868703 (-) 672 WP_062845500.1 PilN domain-containing protein -
  ABXS89_RS13395 (Psyaliredsea_29390) comM 2868703..2869758 (-) 1056 WP_062845501.1 type IV pilus assembly protein PilM Machinery gene
  ABXS89_RS13400 - 2869952..2872586 (+) 2635 Protein_2635 PBP1A family penicillin-binding protein -
  ABXS89_RS13405 (Psyaliredsea_29430) - 2872672..2873199 (-) 528 WP_353670478.1 DUF6586 family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38247.47 Da        Isoelectric Point: 4.4763

>NTDB_id=109862 ABXS89_RS13395 WP_062845501.1 2868703..2869758(-) (comM) [Psychrobacter alimentarius strain Psys_23]
MRLFTSKSRHLIGVDICATSVKLVDIQRQQGAFHLKSYGIERLPEGVVVDKLLVDTEAVGHIIATVARRCQVGGSNAATA
VSGSAVITKIIDMDLALSDVEREAQIRLDADQYVPYPLEDVNLDFEVLGPSLISDDMVQVLLAASRSENVDQRVDALTFG
GMQTKVMDIESHAIERAFGLMADSLTNFPELVALVDIGHNQTTLYIAKNGEFIYSREQLFGGVQLTEAIQNRYGLSAEEA
AFSKRERTLPDDYYIEVLTPFIENTIQQITRSLQFYFSSSQYSSIDHIVLAGGSSAIAGLAGMAQQRLGVPVSVANPFTN
MTIAPHIDNEQLAIDAPSLMAACGLALRSFD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=109862 ABXS89_RS13395 WP_062845501.1 2868703..2869758(-) (comM) [Psychrobacter alimentarius strain Psys_23]
GTGAGGCTATTTACTTCCAAAAGTCGACATTTGATTGGCGTGGATATTTGTGCCACCTCAGTGAAGTTAGTTGACATACA
GCGTCAACAGGGTGCTTTTCACTTAAAGTCTTATGGTATTGAGAGACTGCCGGAAGGTGTGGTCGTTGATAAACTTTTAG
TAGATACAGAAGCGGTTGGTCATATTATTGCTACTGTCGCTAGGCGTTGTCAAGTTGGGGGTAGCAATGCTGCAACCGCC
GTATCAGGCTCGGCTGTGATTACCAAGATTATTGATATGGATCTCGCGCTAAGCGATGTAGAGCGCGAAGCTCAAATACG
TCTGGATGCCGATCAGTATGTTCCTTATCCATTGGAAGACGTCAATTTGGATTTCGAAGTTTTGGGTCCTTCTTTGATAA
GCGATGACATGGTGCAAGTATTGCTTGCTGCATCTCGTTCAGAAAACGTCGACCAACGCGTTGATGCCCTAACTTTTGGC
GGTATGCAAACCAAGGTGATGGACATCGAGTCTCATGCAATTGAGCGTGCTTTTGGATTAATGGCCGATAGTTTAACAAA
TTTTCCAGAGTTAGTAGCACTGGTAGATATTGGGCACAATCAAACGACCTTATATATCGCCAAAAATGGTGAGTTTATCT
ATAGTCGCGAACAGCTATTTGGTGGTGTTCAACTGACAGAAGCTATACAGAATCGTTATGGTCTGTCGGCTGAGGAAGCG
GCGTTTAGTAAGCGTGAGCGTACTTTGCCTGATGACTACTATATCGAAGTATTGACACCTTTCATTGAAAATACCATTCA
ACAAATCACCCGTTCATTACAATTTTATTTCTCTTCAAGTCAATACAGTAGTATCGATCATATAGTGCTTGCTGGCGGCA
GTAGCGCTATAGCAGGTCTTGCAGGTATGGCTCAACAGAGACTTGGTGTGCCTGTTAGTGTGGCCAATCCATTTACCAAT
ATGACCATTGCACCACATATTGACAATGAGCAATTGGCCATTGATGCACCAAGTTTAATGGCCGCTTGCGGTCTTGCGTT
AAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.997

100

0.51
  pilM Acinetobacter baumannii D1279779

50.427

100

0.504
  comM Acinetobacter baylyi ADP1

47.578

100

0.476
  pilM Legionella pneumophila strain ERS1305867

39.943

100

0.402

Multiple sequence alignment