Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACM6AM_RS01835 | Genome accession | NZ_CP181104 |
| Coordinates | 411251..411754 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain AG21-0613 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 407191..432716 | 411251..411754 | within | 0 |
Gene organization within MGE regions
Location: 407191..432716
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACM6AM_RS01805 (ACM6AM_01805) | - | 407191..408036 (+) | 846 | WP_001557587.1 | ParB/RepB/Spo0J family partition protein | - |
| ACM6AM_RS01810 (ACM6AM_01810) | - | 408190..409071 (+) | 882 | WP_000373073.1 | mechanosensitive ion channel family protein | - |
| ACM6AM_RS01815 (ACM6AM_01815) | - | 409101..409304 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| ACM6AM_RS01820 (ACM6AM_01820) | ychF | 409316..410413 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| ACM6AM_RS01825 (ACM6AM_01825) | - | 410499..410690 (-) | 192 | WP_001052484.1 | hypothetical protein | - |
| ACM6AM_RS01830 (ACM6AM_01830) | rpsF | 410934..411230 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| ACM6AM_RS01835 (ACM6AM_01835) | ssbA | 411251..411754 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| ACM6AM_RS01840 (ACM6AM_01840) | rpsR | 411806..412048 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| ACM6AM_RS01845 (ACM6AM_01845) | - | 412277..413074 (-) | 798 | WP_000119675.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| ACM6AM_RS01850 (ACM6AM_01850) | - | 413098..414318 (-) | 1221 | WP_086038034.1 | tyrosine-type recombinase/integrase | - |
| ACM6AM_RS01855 (ACM6AM_01855) | sek | 414407..415135 (-) | 729 | WP_000733775.1 | staphylococcal enterotoxin type K | - |
| ACM6AM_RS01860 (ACM6AM_01860) | seq | 415159..415887 (-) | 729 | WP_001033316.1 | staphylococcal enterotoxin type Q | - |
| ACM6AM_RS01865 (ACM6AM_01865) | - | 415957..416388 (-) | 432 | WP_001228759.1 | hypothetical protein | - |
| ACM6AM_RS01870 (ACM6AM_01870) | - | 416405..416863 (-) | 459 | WP_000281657.1 | ImmA/IrrE family metallo-endopeptidase | - |
| ACM6AM_RS01875 (ACM6AM_01875) | - | 416875..417207 (-) | 333 | WP_001260004.1 | helix-turn-helix domain-containing protein | - |
| ACM6AM_RS01880 (ACM6AM_01880) | - | 417400..417663 (+) | 264 | WP_000243851.1 | helix-turn-helix domain-containing protein | - |
| ACM6AM_RS01885 (ACM6AM_01885) | - | 417656..417928 (+) | 273 | WP_000091731.1 | helix-turn-helix domain-containing protein | - |
| ACM6AM_RS01890 (ACM6AM_01890) | - | 417940..418086 (+) | 147 | WP_000784875.1 | hypothetical protein | - |
| ACM6AM_RS01895 (ACM6AM_01895) | tscA | 418079..418288 (+) | 210 | WP_001058486.1 | type II toxin-antitoxin system antitoxin TscA | - |
| ACM6AM_RS01900 (ACM6AM_01900) | tscT | 418291..418605 (+) | 315 | WP_001103949.1 | type II toxin-antitoxin system toxin TscT | - |
| ACM6AM_RS01905 (ACM6AM_01905) | - | 418676..420928 (+) | 2253 | WP_000974924.1 | phage/plasmid primase, P4 family | - |
| ACM6AM_RS01910 (ACM6AM_01910) | - | 421199..421543 (+) | 345 | WP_000567971.1 | hypothetical protein | - |
| ACM6AM_RS01915 (ACM6AM_01915) | - | 421545..422186 (+) | 642 | WP_001019274.1 | hypothetical protein | - |
| ACM6AM_RS01920 (ACM6AM_01920) | - | 422636..422977 (+) | 342 | WP_001190615.1 | hypothetical protein | - |
| ACM6AM_RS01925 (ACM6AM_01925) | - | 422989..423567 (+) | 579 | WP_000846285.1 | hypothetical protein | - |
| ACM6AM_RS01930 (ACM6AM_01930) | - | 423585..423803 (+) | 219 | WP_000448770.1 | capsid morphogenesis B protein | - |
| ACM6AM_RS01935 (ACM6AM_01935) | - | 423854..424381 (+) | 528 | WP_000771370.1 | spore coat protein | - |
| ACM6AM_RS01940 (ACM6AM_01940) | - | 424384..424725 (+) | 342 | WP_000358778.1 | hypothetical protein | - |
| ACM6AM_RS01945 (ACM6AM_01945) | - | 424722..425291 (+) | 570 | WP_086038030.1 | terminase small subunit | - |
| ACM6AM_RS01950 (ACM6AM_01950) | - | 425566..425736 (+) | 171 | WP_000022954.1 | VraH family peptide resistance protein | - |
| ACM6AM_RS01955 (ACM6AM_01955) | - | 426047..426328 (+) | 282 | WP_001577971.1 | hypothetical protein | - |
| ACM6AM_RS01960 (ACM6AM_01960) | - | 426446..426958 (+) | 513 | WP_000813311.1 | hypothetical protein | - |
| ACM6AM_RS01965 (ACM6AM_01965) | - | 426974..427153 (+) | 180 | WP_000797954.1 | hypothetical protein | - |
| ACM6AM_RS01970 (ACM6AM_01970) | - | 427768..428706 (-) | 939 | WP_001817700.1 | Abi family protein | - |
| ACM6AM_RS01975 (ACM6AM_01975) | - | 428745..429458 (-) | 714 | Protein_392 | tyrosine-type recombinase/integrase | - |
| ACM6AM_RS01980 (ACM6AM_01980) | selX | 429664..430275 (+) | 612 | WP_000475325.1 | staphylococcal enterotoxin-like toxin X | - |
| ACM6AM_RS01985 (ACM6AM_01985) | - | 430644..431012 (+) | 369 | WP_000849163.1 | YxeA family protein | - |
| ACM6AM_RS01990 (ACM6AM_01990) | - | 431193..431765 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| ACM6AM_RS01995 (ACM6AM_01995) | - | 431902..432165 (-) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| ACM6AM_RS02000 (ACM6AM_02000) | - | 432465..432716 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=1098292 ACM6AM_RS01835 WP_000934799.1 411251..411754(+) (ssbA) [Staphylococcus aureus strain AG21-0613]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=1098292 ACM6AM_RS01835 WP_000934799.1 411251..411754(+) (ssbA) [Staphylococcus aureus strain AG21-0613]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |