Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ABXG87_RS09180 Genome accession   NZ_AP031488
Coordinates   1950256..1952226 (-) Length   656 a.a.
NCBI ID   WP_156209965.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1945256..1957226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS09165 (Ssa13956_17440) - 1945858..1946748 (-) 891 WP_002885882.1 hypothetical protein -
  ABXG87_RS09170 (Ssa13956_17450) - 1946808..1948115 (-) 1308 WP_353551555.1 GHKL domain-containing protein -
  ABXG87_RS09175 (Ssa13956_17460) gltX 1948566..1950020 (-) 1455 WP_037611119.1 glutamate--tRNA ligase -
  ABXG87_RS09180 (Ssa13956_17470) amiA 1950256..1952226 (-) 1971 WP_156209965.1 peptide ABC transporter substrate-binding protein Regulator
  ABXG87_RS09185 (Ssa13956_17480) rplA 1952408..1953097 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  ABXG87_RS09190 (Ssa13956_17490) rplK 1953197..1953622 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  ABXG87_RS09195 (Ssa13956_17500) - 1953794..1954147 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  ABXG87_RS09200 (Ssa13956_17510) - 1954243..1954740 (-) 498 WP_002885818.1 carbonic anhydrase -
  ABXG87_RS09205 (Ssa13956_17520) - 1954891..1955586 (-) 696 WP_014632562.1 TIGR00266 family protein -
  ABXG87_RS09210 (Ssa13956_17530) radA 1955672..1957033 (-) 1362 WP_072903619.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72873.74 Da        Isoelectric Point: 5.0816

>NTDB_id=109817 ABXG87_RS09180 WP_156209965.1 1950256..1952226(-) (amiA) [Streptococcus salivarius strain NBRC 13956]
MKKSKVFLLAAVGLLSVGVLTACSSSSKTSGKTYNYVYGSDPATLDYLATNKKNMTTAVSNGVDGLFENDQYGNLKPSVA
EDWSVSQDGLTYTYKIRKGLKWYTSDGEEYANVTAKDFVTGLKHAADTNSEAIYLLQNSIKGLNDYLSGANKDFSNVGIK
AVDDYTLQYTLSQPEPYWNSKLTYSVTWPVNGDFLKSKGKDFGKSTDPTSILYNGPYLLKALTTKSSIEFTKNENYWDKD
HVYFDNIKLTYDDGSDQESLERNFTDGVYNLARLFPTSSNYSKVEKQYKDNIFYTQPGSAVEGVGINIDRQTYGHTSKEN
DQQKTSTKTALLNKDFRQSLGFAIDRTNYAAQLNGKEGGSTAVRNIFVKPDFVQADGKDFGTMVMDQLPAYGDEWSGVNL
ADSQDGLYNPEKAKAEFAKAKEALQAEGVQFPIHLDVPVNQSSKITVNQVQSIKQSVESALGKDNVVLDIHQLSADDFNN
ITYSASNAAAEDWDLSVGVAWDPDYLDPSTYLDVLKTTSSENTKSFMGYDDPNSQAVQKVGLKEYDQLVEDASKETTDLK
VRYEKYAKAQAWLTDSALYLPTTTYNGAAAVISRIKPFSGAYAQAGDKGSSYYFKYLKSQDDIVTKKQYDSAYKDWLKER
AKSNDKAQKDLAKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=109817 ABXG87_RS09180 WP_156209965.1 1950256..1952226(-) (amiA) [Streptococcus salivarius strain NBRC 13956]
ATGAAAAAGAGTAAGGTATTTTTACTGGCAGCCGTAGGCCTGTTATCTGTAGGTGTTTTAACGGCTTGCTCGTCATCAAG
TAAGACGTCTGGTAAGACTTATAATTATGTCTATGGTAGTGACCCTGCAACCTTGGACTATCTTGCTACAAACAAGAAAA
ATATGACTACAGCTGTTAGTAACGGTGTTGATGGTTTGTTTGAAAATGACCAATATGGGAATTTAAAACCTTCTGTCGCT
GAAGACTGGTCTGTTTCTCAAGATGGTTTGACATATACTTACAAGATTCGTAAGGGACTTAAATGGTACACTTCAGATGG
CGAAGAATATGCCAATGTAACAGCTAAGGACTTTGTAACAGGTCTTAAGCATGCTGCGGATACAAATTCTGAAGCGATTT
ATTTGCTACAAAACTCAATTAAGGGCTTGAATGATTACCTTTCAGGTGCCAACAAGGACTTTTCAAATGTAGGTATCAAG
GCTGTTGATGATTACACCTTGCAATATACACTTAGTCAACCAGAACCTTACTGGAATTCAAAATTGACTTACTCTGTTAC
TTGGCCTGTTAATGGAGACTTCTTGAAATCTAAAGGTAAAGATTTTGGTAAGTCAACAGACCCAACATCTATCCTTTATA
ACGGTCCATACCTTCTTAAGGCTTTGACAACGAAGTCATCTATTGAGTTCACCAAGAATGAAAACTATTGGGATAAGGAT
CACGTCTATTTTGATAATATCAAATTGACTTATGATGATGGATCAGACCAAGAGTCTTTGGAACGCAACTTTACAGATGG
TGTATACAACTTAGCACGTCTATTCCCAACAAGTTCTAACTATTCCAAAGTTGAAAAACAGTACAAAGATAATATTTTCT
ATACGCAACCTGGATCAGCTGTAGAAGGTGTTGGTATTAATATTGATCGTCAAACTTATGGTCATACATCTAAAGAAAAT
GACCAGCAAAAGACATCAACTAAGACAGCTCTTCTCAATAAGGATTTCCGTCAATCATTAGGTTTTGCTATTGACCGTAC
AAATTACGCCGCACAACTTAATGGTAAGGAAGGTGGAAGTACTGCCGTCCGTAATATCTTTGTTAAACCAGACTTTGTTC
AAGCAGATGGTAAGGACTTCGGAACAATGGTAATGGATCAACTTCCAGCTTATGGTGATGAGTGGTCTGGTGTGAATCTT
GCAGATAGTCAAGACGGTCTTTATAACCCAGAAAAAGCTAAGGCTGAATTTGCTAAAGCTAAGGAAGCCCTTCAAGCAGA
AGGAGTTCAGTTCCCAATTCATTTGGATGTCCCTGTTAATCAATCAAGTAAAATTACTGTGAATCAGGTACAATCAATTA
AACAGTCTGTTGAATCTGCTCTTGGAAAAGACAATGTTGTGCTTGATATTCACCAATTGTCGGCTGATGATTTTAACAAC
ATCACTTACTCTGCATCAAATGCAGCTGCAGAAGATTGGGACTTGTCAGTGGGTGTGGCTTGGGACCCTGATTACCTTGA
CCCTTCAACTTATCTTGATGTCTTGAAAACGACAAGTAGCGAAAATACTAAATCCTTCATGGGTTATGACGATCCAAATA
GTCAAGCAGTTCAAAAAGTAGGTCTTAAAGAATATGACCAATTGGTTGAAGATGCCTCTAAGGAAACAACAGACTTGAAG
GTTCGTTATGAAAAATATGCAAAAGCTCAAGCATGGTTGACAGATAGTGCCCTCTATCTTCCAACAACTACTTATAACGG
TGCAGCTGCTGTAATTTCTCGTATTAAGCCATTCTCAGGAGCTTATGCTCAAGCTGGTGATAAAGGTTCTTCATACTACT
TCAAGTATCTTAAATCTCAAGATGATATTGTAACTAAAAAACAATACGACTCAGCTTATAAAGATTGGCTTAAAGAAAGA
GCGAAATCTAATGACAAAGCTCAAAAAGATCTTGCCAAACACGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

69.817

100

0.698
  amiA3 Streptococcus thermophilus LMD-9

69.102

100

0.692
  amiA3 Streptococcus thermophilus LMG 18311

68.341

100

0.684

Multiple sequence alignment