Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABXG87_RS09210 Genome accession   NZ_AP031488
Coordinates   1955672..1957033 (-) Length   453 a.a.
NCBI ID   WP_072903619.1    Uniprot ID   A0A1V0HAK4
Organism   Streptococcus salivarius strain NBRC 13956     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1950672..1962033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS09185 (Ssa13956_17480) rplA 1952408..1953097 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  ABXG87_RS09190 (Ssa13956_17490) rplK 1953197..1953622 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  ABXG87_RS09195 (Ssa13956_17500) - 1953794..1954147 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  ABXG87_RS09200 (Ssa13956_17510) - 1954243..1954740 (-) 498 WP_002885818.1 carbonic anhydrase -
  ABXG87_RS09205 (Ssa13956_17520) - 1954891..1955586 (-) 696 WP_014632562.1 TIGR00266 family protein -
  ABXG87_RS09210 (Ssa13956_17530) radA 1955672..1957033 (-) 1362 WP_072903619.1 DNA repair protein RadA Machinery gene
  ABXG87_RS09215 (Ssa13956_17540) - 1957030..1957497 (-) 468 WP_061652425.1 isochorismatase family protein -
  ABXG87_RS09220 (Ssa13956_17550) - 1957508..1957954 (-) 447 WP_156209967.1 dUTP diphosphatase -
  ABXG87_RS09225 (Ssa13956_17560) - 1958162..1958764 (+) 603 WP_353551558.1 NADPH-dependent FMN reductase -
  ABXG87_RS09230 (Ssa13956_17570) - 1958783..1960033 (+) 1251 WP_002885631.1 NAD(P)H-dependent oxidoreductase -
  ABXG87_RS09235 (Ssa13956_17580) - 1960150..1960941 (+) 792 WP_014635096.1 formate/nitrite transporter family protein -
  ABXG87_RS09240 (Ssa13956_17590) - 1960950..1961510 (+) 561 WP_037600087.1 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49449.83 Da        Isoelectric Point: 6.6528

>NTDB_id=109818 ABXG87_RS09210 WP_072903619.1 1955672..1957033(-) (radA) [Streptococcus salivarius strain NBRC 13956]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSINYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
AIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLHGMKIPEGIQVVGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=109818 ABXG87_RS09210 WP_072903619.1 1955672..1957033(-) (radA) [Streptococcus salivarius strain NBRC 13956]
ATAGCAAAGAAAAAATCAACTTTTGTTTGTCGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGTTGCCCCAACTG
TTCTTCTTGGTCCTCTTTTGAGGAAGAAGTTGAGGTGCAGGAGGTGAAAAATGCTCGTGTCAGTTTAACGGGTGAAAAGT
CTAAACCAACTAAATTAAAAGAAGTATCCTCAATTAATTATGCCCGAATAAAGACTGACATGGATGAGTTTAACCGTGTT
TTAGGTGGTGGCGTGGTTCCGGGTAGTCTGGTTCTTATTGGAGGAGATCCAGGTATAGGGAAATCGACTCTCCTCTTACA
GGTTTCAACACAGTTAGCTAACAAGGGAACTGTCCTCTATGTTTCTGGGGAAGAATCCGCCGAGCAAATCAAATTGCGGA
GCGAACGTTTAGGTGATATTGATAACGAATTTTATCTTTATGCTGAGACCAATATGCAAGCCGTTCGTAGCCAAGTGGAG
GCTATAAAACCCGATTTCCTCATTATCGACTCTATTCAGACCATCATGAGTCCAGAGATTTCTGGCGTTCAAGGCTCTGT
ATCTCAGGTTCGTGAAGTTACTGCTGAACTCATGCAGATTGCCAAAACCAATAACATTGCCACATTTATTGTTGGGCATG
TGACCAAGGAGGGACAGCTGGCTGGACCACGTATGTTGGAACACATGGTGGATACTGTGCTCTATTTTGAGGGAGAACGT
CATCATACCTTCCGTATTTTGCGAGCAGTCAAAAACCGTTTTGGTTCAACCAATGAGATTGGGATTTTTGAGATGCAGTC
TGGTGGTTTGGTAGAAGTGCTAAATCCTAGCCAAGTTTTCTTAGAGGAACGCCTAGACGGAGCCACAGGTTCTGCCATTG
TTGTAACAATGGAAGGTAGCAGACCTATCTTAGCTGAAGTTCAAGCCTTGGTGACCCCAACCGTCTTTGGTAATGCCAAG
CGGACAACAACAGGACTGGATTTTAACCGCGTCAGCCTCATTATGGCTGTTTTAGAGAAACGTTGTGGCCTTCTTCTCCA
AAATCAAGATGCTTATTTAAAATCAGCAGGTGGTGTCAAATTGGACGAGCCGGCTATTGACCTTGCTGTCGCTGTTGCCA
TTGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCCTTTATAGGAGAAATTGGCTTGACTGGAGAGATTCGC
CGAGTGACTCGTATTGAACAGCGTATTAATGAAGCTGCTAAATTAGGCTTCACTAAGATCTATGCTCCGAAGAATTCTCT
ACATGGTATGAAAATTCCAGAAGGTATCCAGGTCGTTGGCGTTACGACAGTGGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0HAK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.742

100

0.887
  radA Streptococcus pneumoniae D39

88.742

100

0.887
  radA Streptococcus pneumoniae R6

88.742

100

0.887
  radA Streptococcus pneumoniae TIGR4

88.742

100

0.887
  radA Streptococcus mitis NCTC 12261

88.742

100

0.887
  radA Streptococcus mitis SK321

88.742

100

0.887
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614

Multiple sequence alignment