Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABXG87_RS08840 Genome accession   NZ_AP031488
Coordinates   1883170..1883661 (-) Length   163 a.a.
NCBI ID   WP_195413505.1    Uniprot ID   A0AAW7PC81
Organism   Streptococcus salivarius strain NBRC 13956     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1878170..1888661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS08820 (Ssa13956_16810) - 1880078..1881022 (+) 945 WP_013991181.1 magnesium transporter CorA family protein -
  ABXG87_RS08825 (Ssa13956_16820) - 1881093..1881764 (+) 672 WP_013991182.1 DUF1129 domain-containing protein -
  ABXG87_RS08830 - 1881881..1882762 (+) 882 WP_195413506.1 DUF4300 family protein -
  ABXG87_RS08835 (Ssa13956_16840) rpsR 1882889..1883128 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  ABXG87_RS08840 (Ssa13956_16850) ssb 1883170..1883661 (-) 492 WP_195413505.1 single-stranded DNA-binding protein Machinery gene
  ABXG87_RS08845 (Ssa13956_16860) rpsF 1883673..1883963 (-) 291 WP_003093185.1 30S ribosomal protein S6 -
  ABXG87_RS08850 (Ssa13956_16870) - 1884168..1885121 (+) 954 WP_195413504.1 hypothetical protein -
  ABXG87_RS08855 (Ssa13956_16880) mutY 1886289..1887440 (+) 1152 WP_353551518.1 A/G-specific adenine glycosylase -
  ABXG87_RS08860 (Ssa13956_16890) - 1887462..1887587 (-) 126 WP_353551519.1 hypothetical protein -
  ABXG87_RS08865 (Ssa13956_16900) - 1887736..1887993 (-) 258 WP_353551521.1 hypothetical protein -
  ABXG87_RS08870 (Ssa13956_16910) - 1888014..1888415 (-) 402 WP_353551523.1 DUF6608 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17872.59 Da        Isoelectric Point: 4.9163

>NTDB_id=109816 ABXG87_RS08840 WP_195413505.1 1883170..1883661(-) (ssb) [Streptococcus salivarius strain NBRC 13956]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGSQPAQSTPNFGRDESPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=109816 ABXG87_RS08840 WP_195413505.1 1883170..1883661(-) (ssb) [Streptococcus salivarius strain NBRC 13956]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAACGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAACCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACAGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGCGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGTGGATCACAAC
CTGCGCAATCTACACCAAACTTCGGTCGTGACGAGAGTCCATTTGGTAATTCAAATCCAATGGACATTTCAGATGACGAT
CTCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.14

100

0.614
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.977

100

0.601
  ssb Glaesserella parasuis strain SC1401

33.69

100

0.387
  ssb Vibrio cholerae strain A1552

34.637

100

0.38

Multiple sequence alignment