Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACM26W_RS17680 Genome accession   NZ_CP181044
Coordinates   3762062..3762670 (-) Length   202 a.a.
NCBI ID   WP_416138283.1    Uniprot ID   -
Organism   Halomonas sp. HK25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3757062..3767670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM26W_RS17655 (ACM26W_17655) - 3757904..3758458 (+) 555 WP_416138278.1 DUF2878 domain-containing protein -
  ACM26W_RS17660 (ACM26W_17660) fabA 3758534..3759049 (+) 516 WP_416138279.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  ACM26W_RS17665 (ACM26W_17665) fabB 3759064..3760281 (+) 1218 WP_416138280.1 beta-ketoacyl-ACP synthase I -
  ACM26W_RS17670 (ACM26W_17670) - 3760371..3761135 (-) 765 WP_416138281.1 lysophospholipid acyltransferase family protein -
  ACM26W_RS17675 (ACM26W_17675) - 3761132..3762025 (-) 894 WP_416138282.1 sugar nucleotide-binding protein -
  ACM26W_RS17680 (ACM26W_17680) ssb 3762062..3762670 (-) 609 WP_416138283.1 single-stranded DNA-binding protein Machinery gene
  ACM26W_RS17685 (ACM26W_17685) - 3762785..3764173 (-) 1389 WP_416138284.1 MFS transporter -
  ACM26W_RS17690 (ACM26W_17690) uvrA 3764335..3767187 (+) 2853 WP_416138285.1 excinuclease ABC subunit UvrA -
  ACM26W_RS17695 (ACM26W_17695) rplQ 3767249..3767641 (-) 393 WP_416138286.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21730.84 Da        Isoelectric Point: 5.2423

>NTDB_id=1097894 ACM26W_RS17680 WP_416138283.1 3762062..3762670(-) (ssb) [Halomonas sp. HK25]
MARGVNKVILIGNLGQDPEVRFLPSGAPVANLRLATTDTWMDKQSGQRQERTEWHTLVMFNKLAEIGQQYLKKGSRIYIE
GRLQTRKWQGQDGQDRYSTEIVVNDMQMLDSRAGGGDFQGGGSPQGGQYGGGAPQQGGYGGAPQQQGGGYGGQPQRPAQP
QQRPAPTPPAGQPQGGQPGNQQSNYGAPDPGSFDDFDDEIPF

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1097894 ACM26W_RS17680 WP_416138283.1 3762062..3762670(-) (ssb) [Halomonas sp. HK25]
ATGGCCCGTGGCGTCAACAAGGTCATTCTGATCGGCAACCTGGGACAGGATCCCGAGGTTCGTTTCCTGCCCTCCGGGGC
CCCGGTGGCCAACCTGCGGCTGGCCACCACCGATACCTGGATGGATAAGCAATCCGGCCAGCGACAGGAGCGCACCGAGT
GGCACACCCTGGTGATGTTCAACAAGCTGGCCGAAATCGGCCAGCAGTACCTCAAGAAGGGCTCGCGCATCTACATCGAG
GGTCGCCTCCAGACCCGCAAGTGGCAGGGTCAGGACGGCCAGGATCGCTACAGCACCGAGATCGTCGTCAACGACATGCA
GATGCTCGACTCCCGGGCTGGCGGCGGTGACTTCCAGGGCGGCGGTTCACCTCAGGGTGGCCAATACGGCGGCGGCGCAC
CCCAGCAGGGCGGCTATGGCGGCGCTCCCCAGCAGCAGGGCGGCGGCTATGGCGGTCAGCCTCAGCGTCCGGCCCAGCCC
CAGCAGCGCCCCGCCCCGACCCCGCCGGCGGGGCAGCCCCAGGGCGGTCAGCCGGGTAACCAGCAGAGCAACTACGGGGC
GCCGGATCCGGGCAGCTTCGACGACTTCGATGACGAGATACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.962

100

0.525
  ssb Glaesserella parasuis strain SC1401

45.933

100

0.475
  ssb Neisseria gonorrhoeae MS11

46

99.01

0.455
  ssb Neisseria meningitidis MC58

45.5

99.01

0.45

Multiple sequence alignment