Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ABWV75_RS11390 Genome accession   NZ_AP031487
Coordinates   2275524..2276039 (-) Length   171 a.a.
NCBI ID   WP_002447969.1    Uniprot ID   A0A8I1BDZ2
Organism   Staphylococcus hominis subsp. novobiosepticus strain NBRC 113928     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2270524..2281039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWV75_RS11365 (SKB0068_21970) - 2272000..2272629 (+) 630 WP_353318133.1 NDxxF motif lipoprotein -
  ABWV75_RS11370 (SKB0068_21980) - 2272727..2273305 (-) 579 WP_049335854.1 histidine phosphatase family protein -
  ABWV75_RS11375 (SKB0068_21990) - 2273584..2273832 (-) 249 WP_002447983.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  ABWV75_RS11380 (SKB0068_22000) - 2274113..2275057 (-) 945 WP_353318135.1 hypothetical protein -
  ABWV75_RS11385 (SKB0068_22010) rpsR 2275240..2275482 (-) 243 WP_002447994.1 30S ribosomal protein S18 -
  ABWV75_RS11390 (SKB0068_22020) ssbA 2275524..2276039 (-) 516 WP_002447969.1 single-stranded DNA-binding protein Machinery gene
  ABWV75_RS11395 (SKB0068_22030) rpsF 2276061..2276357 (-) 297 WP_002447961.1 30S ribosomal protein S6 -
  ABWV75_RS11400 (SKB0068_22040) - 2276606..2276797 (+) 192 WP_002447995.1 hypothetical protein -
  ABWV75_RS11405 (SKB0068_22050) ychF 2276866..2277963 (-) 1098 WP_353318138.1 redox-regulated ATPase YchF -
  ABWV75_RS11410 (SKB0068_22060) - 2277975..2278178 (-) 204 WP_048762499.1 DUF951 domain-containing protein -
  ABWV75_RS11415 (SKB0068_22070) - 2278199..2279077 (-) 879 WP_017175670.1 mechanosensitive ion channel family protein -
  ABWV75_RS11420 (SKB0068_22080) - 2279208..2280032 (-) 825 WP_353318139.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18841.33 Da        Isoelectric Point: 4.9265

>NTDB_id=109760 ABWV75_RS11390 WP_002447969.1 2275524..2276039(-) (ssbA) [Staphylococcus hominis subsp. novobiosepticus strain NBRC 113928]
MINRVVLVGRLTKDPEYRSTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRHQGNNDFQDYGQGFGGSQSGQNTSYNNNNNRASNNNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=109760 ABWV75_RS11390 WP_002447969.1 2275524..2276039(-) (ssbA) [Staphylococcus hominis subsp. novobiosepticus strain NBRC 113928]
ATGATAAATCGAGTTGTATTAGTAGGTCGTTTAACTAAGGATCCAGAATACAGAAGTACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAACCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACGTTGTTGTAT
TTAGAAGACAAGCAGAAAACGTAAATAACTATCTTTCAAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGTATATTTGTCACTGAAGTTGTAGCGGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCACAAGGTGGACAACGTCATCAAGGAAATAATGATTTCCAAGATTATGGCCAAGGATTTGGTGGTTCACAATCAGGAC
AAAATACATCTTATAATAATAATAACAATCGTGCATCAAACAATAATCAATCAGATAACCCATTTGCAAATGCAAATGGC
CCAATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.111

100

0.643
  ssb Latilactobacillus sakei subsp. sakei 23K

54.913

100

0.556
  ssb Glaesserella parasuis strain SC1401

34.043

100

0.374
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

61.988

0.374

Multiple sequence alignment