Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACM0O0_RS00970 Genome accession   NZ_CP180689
Coordinates   216993..217583 (+) Length   196 a.a.
NCBI ID   WP_016143745.1    Uniprot ID   R8YZN7
Organism   Acinetobacter lactucae isolate nanjing     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 211993..222583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0O0_RS00945 - 212059..212871 (-) 813 WP_416040919.1 SDR family NAD(P)-dependent oxidoreductase -
  ACM0O0_RS00950 - 212975..213346 (-) 372 WP_016143748.1 MerR family transcriptional regulator -
  ACM0O0_RS00955 tenA 213411..214085 (-) 675 WP_057106279.1 thiaminase II -
  ACM0O0_RS00960 - 214348..215430 (+) 1083 WP_031949587.1 DUF475 domain-containing protein -
  ACM0O0_RS00965 - 215577..216941 (+) 1365 WP_416040920.1 MFS transporter -
  ACM0O0_RS00970 ssb 216993..217583 (+) 591 WP_016143745.1 single-stranded DNA-binding protein Machinery gene
  ACM0O0_RS00975 - 217624..217947 (-) 324 WP_163118784.1 AzlD domain-containing protein -
  ACM0O0_RS00980 - 217944..218639 (-) 696 WP_163118783.1 AzlC family ABC transporter permease -
  ACM0O0_RS00985 - 218708..219256 (+) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  ACM0O0_RS00990 - 219562..221004 (+) 1443 WP_061874391.1 amino acid permease -
  ACM0O0_RS00995 - 221069..222568 (-) 1500 WP_057106282.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21253.03 Da        Isoelectric Point: 6.4822

>NTDB_id=1097441 ACM0O0_RS00970 WP_016143745.1 216993..217583(+) (ssb) [Acinetobacter lactucae isolate nanjing]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGGYGSQ
GGFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1097441 ACM0O0_RS00970 WP_016143745.1 216993..217583(+) (ssb) [Acinetobacter lactucae isolate nanjing]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTATTGCATAACCGTTTAGGGGAAATTGCTCAGCAATTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTATACAACAGAAATCCGTGGCGACCAAATGCAGAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AGGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGTCAAAACAGTGGCGGCGGTTATGGTAGCCAA
GGTGGTTTCGGTAATGGTGGAAGCAATCCTCAAGCGGGTGGTTTTGCGCCTAAAGCTCCGCAACAACCAGCTTCTGCACC
AGCTGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8YZN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.217

100

0.541
  ssb Vibrio cholerae strain A1552

44.776

100

0.459
  ssb Neisseria meningitidis MC58

39.394

100

0.398
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.383

Multiple sequence alignment