Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ABWU76_RS01215 Genome accession   NZ_AP031486
Coordinates   236364..238160 (+) Length   598 a.a.
NCBI ID   WP_353316847.1    Uniprot ID   -
Organism   Finegoldia magna strain NBRC 113804     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 231364..243160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWU76_RS01195 (DN0046_02170) - 231605..232519 (+) 915 WP_002836910.1 cyclic pyranopterin monophosphate synthase MoaC/MOSC-domain-containing protein -
  ABWU76_RS01200 (DN0046_02180) thiC 232700..234001 (+) 1302 WP_110058397.1 phosphomethylpyrimidine synthase ThiC -
  ABWU76_RS01205 (DN0046_02190) - 234160..234636 (+) 477 WP_278726437.1 winged helix DNA-binding protein -
  ABWU76_RS01210 (DN0046_02200) rcrP 234611..236371 (+) 1761 WP_353316846.1 ABC transporter ATP-binding protein Regulator
  ABWU76_RS01215 (DN0046_02210) rcrQ 236364..238160 (+) 1797 WP_353316847.1 ABC transporter ATP-binding protein Regulator
  ABWU76_RS01220 (DN0046_02220) rlmD 238253..239467 (+) 1215 WP_353316848.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  ABWU76_RS01225 (DN0046_02230) tnpA 239818..240276 (+) 459 WP_009431087.1 IS200/IS605 family transposase -
  ABWU76_RS01230 (DN0046_02240) - 240532..241119 (+) 588 WP_353316849.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein -
  ABWU76_RS01235 (DN0046_02250) - 241116..241952 (+) 837 WP_353316850.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  ABWU76_RS01240 (DN0046_02260) - 242133..242354 (+) 222 Protein_230 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 67004.92 Da        Isoelectric Point: 6.2904

>NTDB_id=109719 ABWU76_RS01215 WP_353316847.1 236364..238160(+) (rcrQ) [Finegoldia magna strain NBRC 113804]
MPRQTVNEKPKEFKKTLKEMVGYLKPYFPLILIAVVASVIATILQIIGPDKLKLITDEITKGLPKMVKGKPVLASVNMDN
VKSITIMLVIFYGSSLLLNLLQRFIMADVTQKISKSFREKIAVKINKLPFSYFDNTTYGDILSRVTNDVDTISQSLNQSV
GALLTSIVMLIGTVVMMIYNSGILTITTILSSLVGFVFITIIMKKSQKYFKEQQQNLGDINGQIEEVYTGHNVIKAYNAG
ARAVDEFEQTNTKLYASAWKSQFLSGLMMPIMQFAGNFSYVMVCIVGGALAINGKISFGVIVAFMIYVRLFTNPLSDIAQ
SFNTLQRAAAAGERVFEFLNEDELEEEHVTEKLEKAKGEVEFKNVRFGYDPEKIIIKDFSVKVNPGEKIAIVGPTGAGKT
TIVNLLMRFYEINDGQILVDGIDTKNLSRENLRDQFCMVLQDSWVFEASVRENITFGEKDITDEELIDVCKRVNLDHFIR
TLPNGYDTILNDKQSLSQGQLQLLTIARAMVSHAPMLILDEATSSVDTRTEIIVQDAMDELAKGRTSFVIAHRLSTIKNA
DLILVMKDGDIVEKGKHDELLARDGFYAQLYNAQFERK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=109719 ABWU76_RS01215 WP_353316847.1 236364..238160(+) (rcrQ) [Finegoldia magna strain NBRC 113804]
ATGCCTAGACAAACTGTAAATGAAAAACCGAAAGAATTCAAAAAAACATTAAAAGAAATGGTAGGGTATTTGAAACCTTA
TTTCCCATTGATATTAATAGCGGTTGTAGCAAGCGTGATAGCAACGATATTGCAAATAATTGGGCCAGATAAGCTAAAAC
TCATTACAGACGAAATCACAAAAGGACTTCCTAAAATGGTAAAAGGAAAGCCTGTTTTGGCTTCAGTCAATATGGATAAT
GTCAAATCTATTACAATAATGCTTGTAATATTTTATGGATCGTCTTTATTGCTGAATTTGTTGCAAAGATTCATCATGGC
AGATGTTACGCAAAAAATCTCCAAATCATTCAGAGAAAAAATTGCAGTCAAAATCAACAAATTGCCATTTAGCTATTTTG
ATAACACAACTTACGGAGACATTCTAAGTAGGGTTACAAATGATGTCGACACCATCAGTCAGAGCTTGAACCAATCTGTT
GGAGCATTGTTGACAAGTATCGTAATGCTTATTGGAACTGTAGTGATGATGATTTACAATTCGGGGATATTGACGATAAC
GACGATTTTGTCATCGCTTGTGGGATTTGTGTTCATTACAATAATAATGAAAAAATCACAAAAATATTTCAAAGAACAAC
AACAAAACTTGGGTGATATCAACGGACAAATCGAAGAAGTGTACACTGGTCACAACGTCATCAAAGCTTACAACGCAGGA
GCAAGAGCCGTAGATGAATTTGAACAAACAAACACTAAACTCTACGCTAGTGCATGGAAATCACAATTCTTGTCCGGACT
TATGATGCCAATCATGCAATTTGCAGGAAACTTCTCCTACGTAATGGTCTGCATAGTCGGAGGAGCATTGGCGATTAATG
GCAAAATATCATTCGGGGTTATAGTAGCTTTTATGATATATGTAAGACTATTCACAAATCCTCTATCAGACATTGCACAA
AGCTTCAACACTTTGCAAAGAGCTGCAGCAGCAGGAGAAAGAGTGTTTGAATTTTTGAATGAAGATGAATTAGAAGAAGA
ACACGTCACAGAAAAATTAGAAAAAGCAAAAGGCGAAGTTGAATTCAAAAACGTTAGGTTTGGATATGATCCTGAAAAAA
TCATCATCAAAGATTTCAGCGTAAAAGTAAATCCAGGAGAAAAAATAGCCATCGTTGGTCCAACTGGAGCCGGAAAGACT
ACGATTGTAAATCTATTAATGAGATTTTACGAAATAAACGACGGACAAATATTGGTAGATGGAATTGATACGAAAAACTT
ATCCAGAGAGAATTTGAGAGACCAATTCTGTATGGTACTTCAAGATTCGTGGGTATTCGAAGCAAGTGTCAGAGAAAACA
TAACATTCGGAGAAAAAGATATAACTGACGAAGAATTGATAGACGTGTGCAAACGCGTAAACTTGGATCACTTTATCAGA
ACGCTCCCAAATGGATATGACACTATTTTAAACGACAAACAATCATTGTCTCAAGGACAACTTCAACTACTAACAATCGC
ACGTGCAATGGTAAGTCACGCGCCAATGTTGATACTAGATGAAGCCACAAGCTCTGTGGATACAAGAACTGAAATAATCG
TTCAAGATGCAATGGACGAACTCGCAAAAGGAAGAACATCATTTGTAATCGCACACAGATTATCCACAATCAAAAACGCG
GATTTGATACTTGTAATGAAAGATGGAGATATCGTAGAAAAAGGAAAACACGACGAATTATTGGCAAGAGACGGATTCTA
CGCACAATTATACAACGCGCAATTTGAAAGAAAATAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(31-315)

ABC transporter (ABC_tran)

(377-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.403

97.492

0.54

Multiple sequence alignment