Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ABXH21_RS02625 Genome accession   NZ_AP031472
Coordinates   575456..576508 (+) Length   350 a.a.
NCBI ID   WP_065253720.1    Uniprot ID   -
Organism   Moraxella osloensis strain NBRC 115781     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 570456..581508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXH21_RS02615 (SKB0120_05030) - 571931..572449 (+) 519 WP_312114129.1 DUF6586 family protein -
  ABXH21_RS02620 (SKB0120_05040) - 572525..575254 (-) 2730 WP_353551966.1 transglycosylase domain-containing protein -
  ABXH21_RS02625 (SKB0120_05050) pilM 575456..576508 (+) 1053 WP_065253720.1 pilus assembly protein PilM Machinery gene
  ABXH21_RS02630 (SKB0120_05060) - 576508..577179 (+) 672 WP_050324001.1 PilN domain-containing protein -
  ABXH21_RS02635 (SKB0120_05070) pilO 577236..577940 (+) 705 WP_138019479.1 type 4a pilus biogenesis protein PilO -
  ABXH21_RS02640 (SKB0120_05080) - 577930..578463 (+) 534 WP_203171548.1 pilus assembly protein PilP -
  ABXH21_RS02645 (SKB0120_05090) pilQ 578481..580817 (+) 2337 WP_353551969.1 type IV pilus secretin PilQ -
  ABXH21_RS02650 (SKB0120_05100) - 580925..581461 (+) 537 WP_353551970.1 shikimate kinase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38447.81 Da        Isoelectric Point: 4.5314

>NTDB_id=109699 ABXH21_RS02625 WP_065253720.1 575456..576508(+) (pilM) [Moraxella osloensis strain NBRC 115781]
MRLFTKNNKLVVGVDITTTAIKMVEITRQQGLFHLRNYGIEPLPRGAVVDKNIVDIEAVSDALARLSRSRGFSSKHIATA
VASSSVISKIIEMEADLTELERESLIRLDADQYIPYPLSEVNLDFEVIGPSATPDMCKVLLVASRTENVDQRVDAGALAG
LDTKIVDVESYAVERAFQLMVDSLPGQPQHIALIDIGHSQTTLYIAKDGEFVYSREQLFGGAQLTESIQNRYGLTFEEAM
INKRTLSLPDDYYTDVLLPFLDDIVQQITRSLQFYFSSSQNSQVDYILLGGGSASIAGLASMVEQKLGTRTGIANAFSNM
TINNHINTELLIMDAPSLIAACGLALRSFD

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=109699 ABXH21_RS02625 WP_065253720.1 575456..576508(+) (pilM) [Moraxella osloensis strain NBRC 115781]
GTGAGGTTATTTACAAAAAACAACAAGCTAGTCGTTGGGGTAGATATCACCACCACTGCGATCAAAATGGTTGAAATAAC
ACGGCAGCAAGGTCTATTTCATTTAAGAAATTACGGCATTGAACCGTTACCTCGCGGTGCTGTTGTTGATAAAAATATTG
TAGATATTGAAGCGGTCAGTGACGCCCTCGCAAGATTATCTCGTAGCAGAGGTTTTTCCAGTAAACATATCGCGACAGCC
GTAGCAAGCTCTTCGGTTATTAGCAAAATCATTGAGATGGAAGCGGATCTCACAGAGCTTGAACGAGAATCCCTTATACG
TCTAGATGCTGACCAATATATTCCCTATCCTTTATCAGAAGTTAATTTAGATTTTGAAGTGATTGGCCCTTCAGCTACGC
CTGATATGTGTAAGGTATTGTTAGTTGCCTCTCGCACTGAAAACGTTGACCAACGTGTCGACGCGGGTGCTTTGGCGGGG
CTGGATACTAAAATTGTGGATGTGGAGTCTTACGCAGTTGAACGCGCCTTTCAATTGATGGTCGATAGCTTGCCAGGTCA
ACCTCAGCATATAGCCCTTATTGATATCGGGCACAGCCAAACCACGCTTTATATTGCAAAGGACGGGGAGTTTGTATACA
GCCGAGAGCAGCTTTTTGGCGGCGCCCAGTTAACTGAAAGTATTCAAAATCGTTATGGTTTGACGTTCGAGGAGGCGATG
ATTAATAAGCGCACCCTGTCATTGCCGGATGATTACTATACGGATGTGTTACTGCCATTTTTAGATGACATTGTGCAGCA
AATCACCCGCTCGCTGCAGTTTTATTTTTCATCAAGCCAAAATAGCCAAGTAGACTATATTTTGTTGGGCGGTGGTAGTG
CCAGCATTGCGGGTCTAGCGAGCATGGTTGAACAAAAACTTGGTACCCGCACAGGTATTGCCAATGCATTTTCAAATATG
ACGATTAATAACCATATCAACACTGAATTACTGATTATGGACGCGCCAAGCTTAATAGCAGCTTGTGGCTTGGCGTTACG
GAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

52.137

100

0.523
  comM Acinetobacter nosocomialis M2

51.282

100

0.514
  comM Acinetobacter baylyi ADP1

48.433

100

0.486
  pilM Legionella pneumophila strain ERS1305867

42.776

100

0.431

Multiple sequence alignment