Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ACM2ZB_RS19460 Genome accession   NZ_CP180589
Coordinates   4224333..4225391 (+) Length   352 a.a.
NCBI ID   WP_345785139.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain ZSL2493     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4219333..4230391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM2ZB_RS19445 (ACM2ZB_19445) - 4220097..4220810 (+) 714 WP_416056644.1 hypothetical protein -
  ACM2ZB_RS19450 (ACM2ZB_19450) - 4220832..4221476 (-) 645 WP_416056645.1 hypothetical protein -
  ACM2ZB_RS19455 (ACM2ZB_19455) - 4221693..4224113 (-) 2421 WP_416056646.1 penicillin-binding protein 1A -
  ACM2ZB_RS19460 (ACM2ZB_19460) pilM 4224333..4225391 (+) 1059 WP_345785139.1 pilus assembly protein PilM Machinery gene
  ACM2ZB_RS19465 (ACM2ZB_19465) - 4225391..4226296 (+) 906 WP_416056647.1 PilN domain-containing protein -
  ACM2ZB_RS19470 (ACM2ZB_19470) - 4226293..4226949 (+) 657 WP_313442402.1 type 4a pilus biogenesis protein PilO -
  ACM2ZB_RS19475 (ACM2ZB_19475) - 4226976..4227482 (+) 507 WP_416058585.1 pilus assembly protein PilP -
  ACM2ZB_RS19480 (ACM2ZB_19480) - 4227504..4229477 (+) 1974 WP_416056648.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37713.26 Da        Isoelectric Point: 4.4006

>NTDB_id=1096862 ACM2ZB_RS19460 WP_345785139.1 4224333..4225391(+) (pilM) [Stenotrophomonas maltophilia strain ZSL2493]
MGLIPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKQAAAA
VAGSAVITKVIPMPADLDESDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLQARVMDVEAFAVENAFALVASELPVSSDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALAGLPEMVEEQLGVPTVVANPLA
QMTLGPKVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1096862 ACM2ZB_RS19460 WP_345785139.1 4224333..4225391(+) (pilM) [Stenotrophomonas maltophilia strain ZSL2493]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTCATTGGCGTCGACATCAGTTCGACTGCGGTAAAGCTGTTGCAGCTTTC
CCGCAGCGGCAACCGTTTTCGCGTGGAACATTACGCCGTGGAACCGTTGCCGCCGAATGCTGTGGTCGAAAAGAACATCG
TCGAAGTGGAGGCCGTGGGTGAGGCCATCCGCCGGGCGATGAACCGTTCCGGCAGCAAGGCCAAGCAGGCCGCTGCGGCT
GTGGCCGGTTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGACCTGGACGAAAGCGATATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTATCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGGCGATCCCGAACA
ACCCGGAAATGGTCCAGGTGCTGCTGGCGGCCTCGCGTTCTGAGAACGTGGAGCTGCGCCAGTCTGCGCTGGAGCTGGGC
GGTCTGCAGGCCCGGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTCGCCCTGGTGGCCAGCGAACTGCCGGT
GTCCAGCGACGGGGTGGTGGCCCTGGTCGACATCGGCGCCACCATGACCACCCTGAACGTCCTGCGCGGCGGCCGTAGCC
TCTACAGCCGTGAACAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGATCATGCGCCGCTATGGCCTGAGCTACGAGGAA
GCCGGCCTGGCCAAGCGCCAGGGTGGGCTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCCTTCAAGGAGGCCACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCAGGCAGTGAATTCAACCGGGTCGACCACATCGTGCTGGCCGGCG
GTTGTGCGGCCCTGGCCGGCCTGCCGGAAATGGTCGAGGAACAGCTGGGCGTGCCGACCGTGGTGGCCAACCCGCTGGCG
CAGATGACCCTGGGCCCGAAGGTGCAGGCGCACGCGCTGGCCCAGGATGCCCCTGCGCTGATGATCGCCACCGGTCTGGC
ACTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.42

100

0.514
  comM Acinetobacter nosocomialis M2

51.42

100

0.514
  comM Acinetobacter baylyi ADP1

50

100

0.5
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment