Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACK2OW_RS11695 Genome accession   NZ_CP180575
Coordinates   2178960..2179478 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain K3C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2173960..2184478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2OW_RS11665 (ACK2OW_11665) yyaJ 2174462..2175817 (+) 1356 WP_043858416.1 MFS transporter -
  ACK2OW_RS11670 (ACK2OW_11670) maa 2175851..2176405 (-) 555 WP_033884396.1 sugar O-acetyltransferase -
  ACK2OW_RS11675 (ACK2OW_11675) yyaH 2176423..2176803 (-) 381 WP_416042268.1 VOC family protein -
  ACK2OW_RS11680 (ACK2OW_11680) ccpB 2176859..2177794 (-) 936 WP_120027686.1 transcriptional regulator CcpB -
  ACK2OW_RS11685 (ACK2OW_11685) xth 2177854..2178612 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  ACK2OW_RS11690 (ACK2OW_11690) rpsR 2178677..2178916 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  ACK2OW_RS11695 (ACK2OW_11695) ssbA 2178960..2179478 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  ACK2OW_RS11700 (ACK2OW_11700) rpsF 2179519..2179806 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  ACK2OW_RS11705 (ACK2OW_11705) ychF 2179917..2181017 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  ACK2OW_RS11710 (ACK2OW_11710) yyaE 2181144..2183147 (-) 2004 WP_416042269.1 molybdopterin-dependent oxidoreductase -
  ACK2OW_RS11715 (ACK2OW_11715) yyzM 2183198..2183404 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1096781 ACK2OW_RS11695 WP_003219228.1 2178960..2179478(-) (ssbA) [Bacillus subtilis strain K3C]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1096781 ACK2OW_RS11695 WP_003219228.1 2178960..2179478(-) (ssbA) [Bacillus subtilis strain K3C]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AATTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment