Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACK2OW_RS08770 Genome accession   NZ_CP180575
Coordinates   1614881..1615570 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain K3C     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1609881..1620570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2OW_RS08735 (ACK2OW_08735) flgN 1610061..1610543 (-) 483 WP_014481048.1 flagellar protein FlgN -
  ACK2OW_RS08740 (ACK2OW_08740) flgM 1610559..1610825 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACK2OW_RS08745 (ACK2OW_08745) yvyF 1610906..1611325 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ACK2OW_RS08750 (ACK2OW_08750) comFC 1611399..1612121 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  ACK2OW_RS08755 (ACK2OW_08755) comFB 1612085..1612381 (-) 297 WP_003227989.1 late competence protein ComFB -
  ACK2OW_RS08760 (ACK2OW_08760) comFA 1612441..1613832 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  ACK2OW_RS08765 (ACK2OW_08765) fakBA 1613938..1614783 (-) 846 WP_014481053.1 DegV family protein -
  ACK2OW_RS08770 (ACK2OW_08770) degU 1614881..1615570 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACK2OW_RS08775 (ACK2OW_08775) degS 1615653..1616810 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ACK2OW_RS08780 (ACK2OW_08780) yvyE 1617027..1617680 (+) 654 WP_003227979.1 YigZ family protein -
  ACK2OW_RS08785 (ACK2OW_08785) tagV 1617680..1618855 (+) 1176 WP_072173456.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  ACK2OW_RS08790 (ACK2OW_08790) tagO 1618928..1620004 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1096772 ACK2OW_RS08770 WP_003219701.1 1614881..1615570(-) (degU) [Bacillus subtilis strain K3C]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1096772 ACK2OW_RS08770 WP_003219701.1 1614881..1615570(-) (degU) [Bacillus subtilis strain K3C]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment