Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACK2OW_RS08750 Genome accession   NZ_CP180575
Coordinates   1611399..1612121 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain K3C     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1606399..1617121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2OW_RS08715 (ACK2OW_08715) fliW 1606538..1606969 (-) 432 WP_032726959.1 flagellar assembly protein FliW -
  ACK2OW_RS08720 (ACK2OW_08720) yviE 1606990..1607565 (-) 576 WP_015384781.1 DUF6470 family protein -
  ACK2OW_RS08725 (ACK2OW_08725) flgL 1607612..1608508 (-) 897 WP_416042642.1 flagellar hook-associated protein FlgL -
  ACK2OW_RS08730 (ACK2OW_08730) flgK 1608519..1610042 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  ACK2OW_RS08735 (ACK2OW_08735) flgN 1610061..1610543 (-) 483 WP_014481048.1 flagellar protein FlgN -
  ACK2OW_RS08740 (ACK2OW_08740) flgM 1610559..1610825 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACK2OW_RS08745 (ACK2OW_08745) yvyF 1610906..1611325 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ACK2OW_RS08750 (ACK2OW_08750) comFC 1611399..1612121 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  ACK2OW_RS08755 (ACK2OW_08755) comFB 1612085..1612381 (-) 297 WP_003227989.1 late competence protein ComFB -
  ACK2OW_RS08760 (ACK2OW_08760) comFA 1612441..1613832 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  ACK2OW_RS08765 (ACK2OW_08765) fakBA 1613938..1614783 (-) 846 WP_014481053.1 DegV family protein -
  ACK2OW_RS08770 (ACK2OW_08770) degU 1614881..1615570 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACK2OW_RS08775 (ACK2OW_08775) degS 1615653..1616810 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=1096770 ACK2OW_RS08750 WP_014481051.1 1611399..1612121(-) (comFC) [Bacillus subtilis strain K3C]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1096770 ACK2OW_RS08750 WP_014481051.1 1611399..1612121(-) (comFC) [Bacillus subtilis strain K3C]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992

Multiple sequence alignment