Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMXYR_RS15345 Genome accession   NZ_CP180556
Coordinates   3215972..3216526 (-) Length   184 a.a.
NCBI ID   WP_415889519.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD29_5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3210972..3221526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYR_RS15315 (ACMXYR_15315) glp 3211103..3212317 (-) 1215 WP_415902259.1 gephyrin-like molybdotransferase Glp -
  ACMXYR_RS15320 (ACMXYR_15320) moaB 3212327..3212863 (-) 537 WP_415882711.1 molybdenum cofactor biosynthesis protein B -
  ACMXYR_RS15325 (ACMXYR_15325) moaA 3212916..3213920 (-) 1005 WP_415902260.1 GTP 3',8-cyclase MoaA -
  ACMXYR_RS15330 (ACMXYR_15330) - 3214016..3214393 (+) 378 WP_415902261.1 SirB2 family protein -
  ACMXYR_RS15335 (ACMXYR_15335) rfbD 3214415..3215326 (-) 912 WP_415902262.1 dTDP-4-dehydrorhamnose reductase -
  ACMXYR_RS15340 (ACMXYR_15340) grxC 3215526..3215765 (-) 240 WP_415882715.1 glutaredoxin 3 -
  ACMXYR_RS15345 (ACMXYR_15345) ssb 3215972..3216526 (-) 555 WP_415889519.1 single-stranded DNA-binding protein Machinery gene
  ACMXYR_RS15350 (ACMXYR_15350) uvrA 3216713..3219541 (+) 2829 WP_415902263.1 excinuclease ABC subunit UvrA -
  ACMXYR_RS15355 (ACMXYR_15355) - 3219581..3220249 (-) 669 WP_415902264.1 acyltransferase -
  ACMXYR_RS15360 (ACMXYR_15360) rplQ 3220365..3220754 (-) 390 WP_415882719.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20224.39 Da        Isoelectric Point: 4.9658

>NTDB_id=1096570 ACMXYR_RS15345 WP_415889519.1 3215972..3216526(-) (ssb) [Neptuniibacter sp. QD29_5]
MARGVNKVILVGNLGGDPEVRYMPNGNAVTNVTIATSESWKDKQTGQQQERTEWHRVVFFNRLAEIAGEYMRKGGKVYVE
GALRTRKWQDQSGQDRYTTEIVASEMQLLDSRGGNEGGYAPQQQQGGYAQQPQQQAPAPQMAPQMAPQAAPQQAPQQRPA
PAPQQAPAPQAAPGFDDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=1096570 ACMXYR_RS15345 WP_415889519.1 3215972..3216526(-) (ssb) [Neptuniibacter sp. QD29_5]
ATGGCACGTGGTGTTAATAAAGTAATTTTGGTGGGCAATCTGGGTGGAGATCCAGAAGTACGTTATATGCCAAATGGCAA
TGCTGTAACTAATGTAACCATCGCAACGTCTGAATCATGGAAAGATAAGCAGACGGGCCAGCAGCAAGAGCGTACTGAAT
GGCACCGTGTGGTATTTTTTAACCGTCTAGCGGAGATCGCTGGCGAGTATATGCGTAAAGGCGGCAAGGTTTACGTTGAA
GGTGCGCTGCGTACTCGTAAATGGCAGGATCAAAGTGGCCAGGATCGTTACACTACTGAGATCGTAGCAAGCGAAATGCA
GTTGCTTGATAGTCGTGGTGGTAACGAAGGTGGCTATGCTCCTCAGCAACAACAGGGTGGTTATGCACAACAGCCACAAC
AGCAAGCACCTGCTCCACAAATGGCGCCGCAGATGGCTCCACAAGCTGCGCCTCAGCAAGCTCCTCAGCAGCGTCCTGCT
CCAGCACCGCAACAAGCGCCTGCACCTCAAGCGGCACCGGGTTTTGATGATTTTGATGATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.15

100

0.571
  ssb Glaesserella parasuis strain SC1401

56.522

100

0.565
  ssb Neisseria gonorrhoeae MS11

52.222

97.826

0.511
  ssb Neisseria meningitidis MC58

48.889

97.826

0.478

Multiple sequence alignment