Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMXYT_RS15550 Genome accession   NZ_CP180552
Coordinates   3302868..3303422 (-) Length   184 a.a.
NCBI ID   WP_415889519.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD37_11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3297868..3308422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYT_RS15520 (ACMXYT_15520) glp 3297998..3299212 (-) 1215 WP_415899431.1 gephyrin-like molybdotransferase Glp -
  ACMXYT_RS15525 (ACMXYT_15525) moaB 3299222..3299758 (-) 537 WP_415899432.1 molybdenum cofactor biosynthesis protein B -
  ACMXYT_RS15530 (ACMXYT_15530) moaA 3299811..3300815 (-) 1005 WP_415882712.1 GTP 3',8-cyclase MoaA -
  ACMXYT_RS15535 (ACMXYT_15535) - 3300912..3301289 (+) 378 WP_415899433.1 SirB2 family protein -
  ACMXYT_RS15540 (ACMXYT_15540) rfbD 3301311..3302222 (-) 912 WP_415899434.1 dTDP-4-dehydrorhamnose reductase -
  ACMXYT_RS15545 (ACMXYT_15545) grxC 3302422..3302661 (-) 240 WP_415882715.1 glutaredoxin 3 -
  ACMXYT_RS15550 (ACMXYT_15550) ssb 3302868..3303422 (-) 555 WP_415889519.1 single-stranded DNA-binding protein Machinery gene
  ACMXYT_RS15555 (ACMXYT_15555) uvrA 3303609..3306437 (+) 2829 WP_415899435.1 excinuclease ABC subunit UvrA -
  ACMXYT_RS15560 (ACMXYT_15560) - 3306477..3307145 (-) 669 WP_415899436.1 acyltransferase -
  ACMXYT_RS15565 (ACMXYT_15565) rplQ 3307262..3307651 (-) 390 WP_415882719.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20224.39 Da        Isoelectric Point: 4.9658

>NTDB_id=1096524 ACMXYT_RS15550 WP_415889519.1 3302868..3303422(-) (ssb) [Neptuniibacter sp. QD37_11]
MARGVNKVILVGNLGGDPEVRYMPNGNAVTNVTIATSESWKDKQTGQQQERTEWHRVVFFNRLAEIAGEYMRKGGKVYVE
GALRTRKWQDQSGQDRYTTEIVASEMQLLDSRGGNEGGYAPQQQQGGYAQQPQQQAPAPQMAPQMAPQAAPQQAPQQRPA
PAPQQAPAPQAAPGFDDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=1096524 ACMXYT_RS15550 WP_415889519.1 3302868..3303422(-) (ssb) [Neptuniibacter sp. QD37_11]
ATGGCACGTGGTGTTAATAAAGTAATTTTGGTGGGCAATCTGGGTGGAGATCCAGAAGTACGTTATATGCCAAATGGCAA
TGCTGTAACTAATGTAACCATCGCAACGTCTGAATCATGGAAAGATAAGCAGACGGGCCAGCAGCAAGAGCGTACTGAAT
GGCACCGTGTGGTATTTTTTAACCGTCTAGCGGAGATCGCTGGCGAGTATATGCGTAAAGGCGGTAAGGTTTACGTTGAA
GGCGCCTTGCGTACTCGTAAATGGCAGGATCAAAGTGGTCAGGATCGTTACACGACTGAGATTGTAGCAAGCGAAATGCA
GTTGCTTGATAGTCGTGGCGGTAACGAAGGTGGCTATGCTCCTCAGCAACAACAGGGTGGTTATGCACAACAGCCACAAC
AGCAAGCACCTGCTCCACAAATGGCGCCGCAGATGGCTCCACAAGCTGCGCCTCAGCAAGCTCCTCAGCAGCGTCCTGCT
CCAGCACCGCAGCAAGCGCCTGCACCGCAAGCGGCACCGGGTTTTGATGATTTCGATGATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.15

100

0.571
  ssb Glaesserella parasuis strain SC1401

56.522

100

0.565
  ssb Neisseria gonorrhoeae MS11

52.222

97.826

0.511
  ssb Neisseria meningitidis MC58

48.889

97.826

0.478

Multiple sequence alignment