Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   ACMXYT_RS07230 Genome accession   NZ_CP180552
Coordinates   1588446..1589204 (+) Length   252 a.a.
NCBI ID   WP_415912102.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD37_11     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1583446..1594204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYT_RS07200 (ACMXYT_07200) - 1583732..1584343 (+) 612 WP_415900957.1 fasciclin domain-containing protein -
  ACMXYT_RS07205 (ACMXYT_07205) - 1584453..1584815 (+) 363 WP_415900958.1 hypothetical protein -
  ACMXYT_RS07210 (ACMXYT_07210) - 1585074..1585403 (+) 330 WP_415900959.1 hypothetical protein -
  ACMXYT_RS07215 (ACMXYT_07215) - 1585919..1587034 (+) 1116 WP_415900960.1 hypothetical protein -
  ACMXYT_RS07220 (ACMXYT_07220) - 1587205..1587693 (+) 489 WP_415900961.1 paraquat-inducible protein A -
  ACMXYT_RS07225 (ACMXYT_07225) - 1587686..1588306 (+) 621 WP_415900962.1 uracil-DNA glycosylase -
  ACMXYT_RS07230 (ACMXYT_07230) ideA 1588446..1589204 (+) 759 WP_415912102.1 endonuclease Regulator
  ACMXYT_RS07235 (ACMXYT_07235) - 1589245..1592877 (-) 3633 WP_415912103.1 response regulator -
  ACMXYT_RS07240 (ACMXYT_07240) - 1592902..1594128 (-) 1227 WP_415912104.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 28833.99 Da        Isoelectric Point: 9.6411

>NTDB_id=1096516 ACMXYT_RS07230 WP_415912102.1 1588446..1589204(+) (ideA) [Neptuniibacter sp. QD37_11]
MYKYFSVALLMIPGLALAEHPKSFGSAKKILKEIYADNQQSFYCGCDYKAQGKKLVPDLKSCGYLPRKNANRAKRIEWEH
VMPAWAFGHQLQCWQDGGRKACKKSPNFKKMESDLHNLVPAIGEVNGDRSNFSFTQLAGEPRVYGQCDMEVDFKQRKAEP
AEHRRGDIARTYFYMRDQYGVRISNKQEKLFNAWAKLDPVDQWELERNRMITQIQGNTNPYVVAPTGSAKLAESTENKHG
LLSRLKTALSMD

Nucleotide


Download         Length: 759 bp        

>NTDB_id=1096516 ACMXYT_RS07230 WP_415912102.1 1588446..1589204(+) (ideA) [Neptuniibacter sp. QD37_11]
ATGTACAAGTACTTTTCTGTGGCTCTTCTAATGATCCCAGGCTTGGCTTTAGCTGAGCATCCTAAGTCTTTCGGTAGTGC
TAAAAAGATTCTTAAAGAGATCTACGCAGATAACCAGCAGAGCTTTTATTGTGGTTGTGACTATAAAGCTCAAGGTAAAA
AGTTAGTGCCAGATTTAAAATCCTGTGGCTACTTACCACGTAAAAACGCGAATAGAGCAAAGCGTATTGAGTGGGAGCAC
GTAATGCCGGCTTGGGCTTTTGGTCATCAATTGCAATGTTGGCAAGATGGTGGCCGTAAAGCTTGTAAGAAGAGCCCTAA
TTTCAAGAAGATGGAATCTGACCTTCACAACCTTGTACCTGCAATCGGCGAGGTTAATGGTGATCGATCTAATTTTAGCT
TCACACAATTAGCAGGTGAACCGCGTGTTTATGGGCAATGTGATATGGAAGTCGATTTTAAGCAGCGTAAGGCCGAGCCA
GCTGAACATCGCCGTGGCGACATTGCTCGTACGTACTTTTATATGCGCGATCAGTATGGCGTTCGTATCAGTAATAAGCA
GGAAAAGCTGTTTAATGCTTGGGCAAAGCTAGATCCCGTTGATCAATGGGAGTTAGAGCGCAATCGAATGATTACTCAAA
TCCAAGGTAATACTAACCCTTATGTTGTTGCGCCAACTGGCTCAGCAAAATTGGCGGAATCGACAGAAAATAAGCATGGT
TTATTATCTCGCCTTAAAACTGCATTGAGTATGGATTAG

Domains

Predicted by InterproScan.

Endonuclease I (Endonuclease_1)

(34-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

59.361

86.905

0.516
  dns Vibrio parahaemolyticus RIMD 2210633

56.696

88.889

0.504
  dns Vibrio cholerae strain A1552

56.696

88.889

0.504
  dns Aliivibrio fischeri ES114

59.048

83.333

0.492
  dns Campylobacter jejuni RM1221

44.091

87.302

0.385

Multiple sequence alignment