Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   ACMXYU_RS07490 Genome accession   NZ_CP180551
Coordinates   1638572..1639330 (+) Length   252 a.a.
NCBI ID   WP_415900963.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD48_11     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1633572..1644330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYU_RS07460 (ACMXYU_07460) - 1633858..1634469 (+) 612 WP_415900957.1 fasciclin domain-containing protein -
  ACMXYU_RS07465 (ACMXYU_07465) - 1634579..1634941 (+) 363 WP_415900958.1 hypothetical protein -
  ACMXYU_RS07470 (ACMXYU_07470) - 1635200..1635529 (+) 330 WP_415900959.1 hypothetical protein -
  ACMXYU_RS07475 (ACMXYU_07475) - 1636045..1637160 (+) 1116 WP_415900960.1 hypothetical protein -
  ACMXYU_RS07480 (ACMXYU_07480) - 1637331..1637819 (+) 489 WP_415900961.1 paraquat-inducible protein A -
  ACMXYU_RS07485 (ACMXYU_07485) - 1637812..1638432 (+) 621 WP_415900962.1 uracil-DNA glycosylase -
  ACMXYU_RS07490 (ACMXYU_07490) ideA 1638572..1639330 (+) 759 WP_415900963.1 endonuclease Regulator
  ACMXYU_RS07495 (ACMXYU_07495) - 1639371..1643003 (-) 3633 WP_415900964.1 response regulator -
  ACMXYU_RS07500 (ACMXYU_07500) - 1643028..1644254 (-) 1227 WP_415900965.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 28807.90 Da        Isoelectric Point: 9.6411

>NTDB_id=1096493 ACMXYU_RS07490 WP_415900963.1 1638572..1639330(+) (ideA) [Neptuniibacter sp. QD48_11]
MYKYFSVALLMIPGLALAEHPKSFGSAKKILKEIYADNQQSFYCGCDYKAQGKKLVPDLKSCGYSPRKNANRAKRIEWEH
VMPAWAFGHQLQCWQDGGRKACKKSPNFKKMESDLHNLVPAIGEVNGDRSNFSFTQLAGEPRVYGQCDMEVDFKQRKAEP
AEHRRGDIARTYFYMRDQYGVRISNKQEKLFNAWAKLDPVDQWELERNRMITQIQGNTNPYVVAPTGSAKLAESTENKHG
LLSRLKTALSMD

Nucleotide


Download         Length: 759 bp        

>NTDB_id=1096493 ACMXYU_RS07490 WP_415900963.1 1638572..1639330(+) (ideA) [Neptuniibacter sp. QD48_11]
ATGTACAAGTACTTTTCTGTGGCTCTTCTAATGATCCCAGGCTTGGCTTTAGCTGAGCATCCTAAGTCTTTCGGTAGTGC
TAAAAAGATTCTTAAAGAGATCTACGCAGATAACCAGCAGAGCTTTTATTGTGGTTGTGACTATAAAGCTCAAGGTAAAA
AGTTAGTGCCAGATTTAAAATCCTGTGGCTACTCACCACGTAAAAACGCGAATAGAGCAAAGCGTATTGAGTGGGAGCAC
GTAATGCCGGCTTGGGCTTTTGGTCATCAATTGCAATGTTGGCAAGATGGTGGCCGTAAAGCTTGTAAGAAGAGCCCTAA
TTTCAAGAAGATGGAATCTGACCTTCACAACCTTGTACCTGCAATCGGCGAGGTTAATGGTGATCGATCTAATTTTAGCT
TCACACAATTAGCAGGTGAACCGCGTGTTTATGGGCAATGTGATATGGAAGTCGATTTTAAGCAGCGTAAGGCCGAGCCA
GCTGAACATCGCCGTGGCGACATTGCTCGTACGTACTTTTATATGCGCGATCAGTATGGCGTTCGTATCAGTAATAAGCA
GGAAAAGCTGTTTAATGCTTGGGCAAAGCTAGATCCCGTTGATCAATGGGAGTTAGAGCGCAATCGAATGATTACTCAAA
TCCAAGGTAATACTAACCCTTATGTTGTTGCACCAACTGGCTCAGCAAAATTGGCGGAATCGACAGAAAATAAGCATGGT
TTATTATCTCGCCTTAAAACTGCATTGAGTATGGATTAG

Domains

Predicted by InterproScan.

Endonuclease I (Endonuclease_1)

(34-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

59.361

86.905

0.516
  dns Vibrio parahaemolyticus RIMD 2210633

56.696

88.889

0.504
  dns Vibrio cholerae strain A1552

56.696

88.889

0.504
  dns Aliivibrio fischeri ES114

59.048

83.333

0.492
  dns Campylobacter jejuni RM1221

44.091

87.302

0.385

Multiple sequence alignment