Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMXYO_RS15900 Genome accession   NZ_CP180550
Coordinates   3328167..3328724 (-) Length   185 a.a.
NCBI ID   WP_415886115.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD37_6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3323167..3333724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYO_RS15885 (ACMXYO_15885) - 3324562..3326310 (+) 1749 WP_415886111.1 type I secretion system permease/ATPase -
  ACMXYO_RS15890 (ACMXYO_15890) - 3326288..3327589 (+) 1302 WP_415886112.1 HlyD family type I secretion periplasmic adaptor subunit -
  ACMXYO_RS15895 (ACMXYO_15895) grxC 3327721..3327960 (-) 240 WP_415886114.1 glutaredoxin 3 -
  ACMXYO_RS15900 (ACMXYO_15900) ssb 3328167..3328724 (-) 558 WP_415886115.1 single-stranded DNA-binding protein Machinery gene
  ACMXYO_RS15905 (ACMXYO_15905) uvrA 3328911..3331739 (+) 2829 WP_415886117.1 excinuclease ABC subunit UvrA -
  ACMXYO_RS15910 (ACMXYO_15910) - 3331779..3332447 (-) 669 WP_415886118.1 acyltransferase -
  ACMXYO_RS15915 (ACMXYO_15915) rplQ 3332563..3332952 (-) 390 WP_415886120.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20382.55 Da        Isoelectric Point: 4.9658

>NTDB_id=1096478 ACMXYO_RS15900 WP_415886115.1 3328167..3328724(-) (ssb) [Neptuniibacter sp. QD37_6]
MARGVNKVILVGNLGGDPEVRYMPNGNAVTNVTIATSESWKDKQTGQQQERTEWHRVVFFNRLAEIAGEYMRKGGKVYVE
GALRTRKWQDQSGQDRYTTEIVASEMQLLDSRGGNEGGYAPQQQQGGYAQQPQQQQAPAPQMAPQMAPQAAPQQAPQQRP
APTPQQAPAPQAAPGFDDFDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=1096478 ACMXYO_RS15900 WP_415886115.1 3328167..3328724(-) (ssb) [Neptuniibacter sp. QD37_6]
ATGGCACGTGGTGTTAATAAAGTAATTTTGGTGGGCAATCTGGGTGGAGATCCAGAAGTACGTTATATGCCAAATGGCAA
TGCTGTAACTAATGTAACCATCGCAACGTCTGAATCATGGAAAGATAAGCAGACGGGCCAGCAGCAAGAGCGTACTGAAT
GGCACCGTGTGGTATTTTTTAACCGTCTAGCGGAGATCGCTGGCGAGTATATGCGCAAAGGCGGCAAGGTTTACGTTGAA
GGTGCGTTGCGTACCCGTAAATGGCAGGATCAAAGTGGTCAGGATCGTTACACTACTGAGATCGTAGCAAGCGAAATGCA
GTTGCTTGATAGTCGCGGCGGTAACGAAGGTGGCTATGCTCCTCAGCAGCAACAGGGTGGTTATGCACAACAGCCACAAC
AGCAGCAAGCACCGGCTCCTCAAATGGCGCCACAGATGGCTCCACAAGCTGCGCCTCAGCAAGCTCCTCAGCAGCGTCCT
GCTCCAACACCGCAACAGGCGCCTGCACCTCAAGCTGCACCAGGTTTTGATGATTTTGATGATGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.959

100

0.584
  ssb Glaesserella parasuis strain SC1401

55.978

99.459

0.557
  ssb Neisseria gonorrhoeae MS11

51.934

97.838

0.508
  ssb Neisseria meningitidis MC58

50.276

97.838

0.492

Multiple sequence alignment