Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMXYS_RS16030 Genome accession   NZ_CP180549
Coordinates   3505329..3505886 (-) Length   185 a.a.
NCBI ID   WP_415882716.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD57_21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3500329..3510886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYS_RS16000 (ACMXYS_16000) glp 3500459..3501673 (-) 1215 WP_415897109.1 gephyrin-like molybdotransferase Glp -
  ACMXYS_RS16005 (ACMXYS_16005) moaB 3501683..3502219 (-) 537 WP_415897110.1 molybdenum cofactor biosynthesis protein B -
  ACMXYS_RS16010 (ACMXYS_16010) moaA 3502272..3503276 (-) 1005 WP_415897111.1 GTP 3',8-cyclase MoaA -
  ACMXYS_RS16015 (ACMXYS_16015) - 3503372..3503749 (+) 378 WP_415897112.1 SirB2 family protein -
  ACMXYS_RS16020 (ACMXYS_16020) rfbD 3503771..3504682 (-) 912 WP_415897113.1 dTDP-4-dehydrorhamnose reductase -
  ACMXYS_RS16025 (ACMXYS_16025) grxC 3504882..3505121 (-) 240 WP_415897114.1 glutaredoxin 3 -
  ACMXYS_RS16030 (ACMXYS_16030) ssb 3505329..3505886 (-) 558 WP_415882716.1 single-stranded DNA-binding protein Machinery gene
  ACMXYS_RS16035 (ACMXYS_16035) uvrA 3506073..3508901 (+) 2829 WP_415897115.1 excinuclease ABC subunit UvrA -
  ACMXYS_RS16040 (ACMXYS_16040) - 3508941..3509609 (-) 669 WP_415897116.1 acyltransferase -
  ACMXYS_RS16045 (ACMXYS_16045) rplQ 3509726..3510115 (-) 390 WP_415882719.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20352.52 Da        Isoelectric Point: 4.9658

>NTDB_id=1096455 ACMXYS_RS16030 WP_415882716.1 3505329..3505886(-) (ssb) [Neptuniibacter sp. QD57_21]
MARGVNKVILVGNLGGDPEVRYMPNGNAVTNVTIATSESWKDKQTGQQQERTEWHRVVFFNRLAEIAGEYMRKGGKVYVE
GALRTRKWQDQSGQDRYTTEIVASEMQLLDSRGGNEGGYAPQQQQGGYAQQPQQQQAPAPQMAPQMAPQAAPQQAPQQRP
APAPQQAPAPQAAPGFDDFDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=1096455 ACMXYS_RS16030 WP_415882716.1 3505329..3505886(-) (ssb) [Neptuniibacter sp. QD57_21]
ATGGCACGTGGTGTTAATAAAGTAATTTTGGTGGGCAATCTGGGTGGAGACCCAGAAGTACGTTATATGCCAAATGGCAA
TGCTGTAACTAATGTAACCATCGCAACGTCTGAATCATGGAAAGATAAGCAGACGGGCCAGCAGCAAGAGCGTACTGAAT
GGCACCGTGTGGTATTTTTTAACCGTCTAGCGGAGATCGCTGGCGAGTATATGCGTAAAGGCGGCAAGGTTTACGTTGAA
GGCGCGTTGCGTACCCGTAAATGGCAGGATCAAAGTGGCCAGGATCGTTACACGACTGAGATCGTAGCAAGCGAAATGCA
GTTGCTTGATAGTCGTGGCGGTAACGAAGGTGGCTATGCTCCTCAGCAACAACAGGGTGGTTATGCACAACAGCCACAAC
AGCAGCAAGCACCGGCGCCACAAATGGCACCGCAGATGGCTCCACAAGCTGCGCCTCAGCAAGCTCCTCAGCAGCGTCCT
GCTCCAGCACCGCAACAGGCGCCTGCGCCTCAAGCTGCACCAGGTTTTGATGATTTTGATGATGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.959

100

0.584
  ssb Glaesserella parasuis strain SC1401

56.522

99.459

0.562
  ssb Neisseria gonorrhoeae MS11

52.486

97.838

0.514
  ssb Neisseria meningitidis MC58

50.829

97.838

0.497

Multiple sequence alignment