Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMXYX_RS16255 Genome accession   NZ_CP180547
Coordinates   3545788..3546345 (-) Length   185 a.a.
NCBI ID   WP_415882716.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD72_48     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3540788..3551345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYX_RS16225 (ACMXYX_16225) glp 3540918..3542132 (-) 1215 WP_415897109.1 gephyrin-like molybdotransferase Glp -
  ACMXYX_RS16230 (ACMXYX_16230) moaB 3542142..3542678 (-) 537 WP_415897110.1 molybdenum cofactor biosynthesis protein B -
  ACMXYX_RS16235 (ACMXYX_16235) moaA 3542731..3543735 (-) 1005 WP_415897111.1 GTP 3',8-cyclase MoaA -
  ACMXYX_RS16240 (ACMXYX_16240) - 3543831..3544208 (+) 378 WP_415897112.1 SirB2 family protein -
  ACMXYX_RS16245 (ACMXYX_16245) rfbD 3544230..3545141 (-) 912 WP_415897113.1 dTDP-4-dehydrorhamnose reductase -
  ACMXYX_RS16250 (ACMXYX_16250) grxC 3545341..3545580 (-) 240 WP_415897114.1 glutaredoxin 3 -
  ACMXYX_RS16255 (ACMXYX_16255) ssb 3545788..3546345 (-) 558 WP_415882716.1 single-stranded DNA-binding protein Machinery gene
  ACMXYX_RS16260 (ACMXYX_16260) uvrA 3546532..3549360 (+) 2829 WP_415906290.1 excinuclease ABC subunit UvrA -
  ACMXYX_RS16265 (ACMXYX_16265) - 3549400..3550068 (-) 669 WP_415897116.1 acyltransferase -
  ACMXYX_RS16270 (ACMXYX_16270) rplQ 3550185..3550574 (-) 390 WP_415882719.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20352.52 Da        Isoelectric Point: 4.9658

>NTDB_id=1096432 ACMXYX_RS16255 WP_415882716.1 3545788..3546345(-) (ssb) [Neptuniibacter sp. QD72_48]
MARGVNKVILVGNLGGDPEVRYMPNGNAVTNVTIATSESWKDKQTGQQQERTEWHRVVFFNRLAEIAGEYMRKGGKVYVE
GALRTRKWQDQSGQDRYTTEIVASEMQLLDSRGGNEGGYAPQQQQGGYAQQPQQQQAPAPQMAPQMAPQAAPQQAPQQRP
APAPQQAPAPQAAPGFDDFDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=1096432 ACMXYX_RS16255 WP_415882716.1 3545788..3546345(-) (ssb) [Neptuniibacter sp. QD72_48]
ATGGCACGTGGTGTTAATAAAGTAATTTTGGTGGGCAATCTGGGTGGAGACCCAGAAGTACGTTATATGCCAAATGGCAA
TGCTGTAACTAATGTAACCATCGCAACGTCTGAATCATGGAAAGATAAGCAGACGGGCCAGCAGCAAGAGCGTACTGAAT
GGCACCGTGTGGTATTTTTTAACCGTCTAGCGGAGATCGCTGGCGAGTATATGCGTAAAGGCGGCAAGGTTTACGTTGAA
GGCGCGTTGCGTACCCGTAAATGGCAGGATCAAAGTGGCCAGGATCGTTACACGACTGAGATCGTAGCAAGCGAAATGCA
GTTGCTTGATAGTCGTGGCGGTAACGAAGGTGGCTATGCTCCTCAGCAACAACAGGGTGGTTATGCACAACAGCCACAAC
AGCAGCAAGCACCGGCGCCACAAATGGCACCGCAGATGGCTCCACAAGCTGCGCCTCAGCAAGCTCCTCAGCAGCGTCCT
GCTCCAGCACCGCAACAGGCGCCTGCGCCTCAAGCTGCACCAGGTTTTGATGATTTTGATGATGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.959

100

0.584
  ssb Glaesserella parasuis strain SC1401

56.522

99.459

0.562
  ssb Neisseria gonorrhoeae MS11

52.486

97.838

0.514
  ssb Neisseria meningitidis MC58

50.829

97.838

0.497

Multiple sequence alignment