Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMXYP_RS16380 Genome accession   NZ_CP180546
Coordinates   3574852..3575409 (-) Length   185 a.a.
NCBI ID   WP_415882716.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD34_54     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3569852..3580409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYP_RS16350 (ACMXYP_16350) glp 3569982..3571196 (-) 1215 WP_415882710.1 gephyrin-like molybdotransferase Glp -
  ACMXYP_RS16355 (ACMXYP_16355) moaB 3571206..3571742 (-) 537 WP_415882711.1 molybdenum cofactor biosynthesis protein B -
  ACMXYP_RS16360 (ACMXYP_16360) moaA 3571795..3572799 (-) 1005 WP_415882712.1 GTP 3',8-cyclase MoaA -
  ACMXYP_RS16365 (ACMXYP_16365) - 3572896..3573273 (+) 378 WP_415882713.1 SirB2 family protein -
  ACMXYP_RS16370 (ACMXYP_16370) rfbD 3573295..3574206 (-) 912 WP_415882714.1 dTDP-4-dehydrorhamnose reductase -
  ACMXYP_RS16375 (ACMXYP_16375) grxC 3574406..3574645 (-) 240 WP_415882715.1 glutaredoxin 3 -
  ACMXYP_RS16380 (ACMXYP_16380) ssb 3574852..3575409 (-) 558 WP_415882716.1 single-stranded DNA-binding protein Machinery gene
  ACMXYP_RS16385 (ACMXYP_16385) uvrA 3575596..3578424 (+) 2829 WP_415882717.1 excinuclease ABC subunit UvrA -
  ACMXYP_RS16390 (ACMXYP_16390) - 3578464..3579132 (-) 669 WP_415882718.1 acyltransferase -
  ACMXYP_RS16395 (ACMXYP_16395) rplQ 3579249..3579638 (-) 390 WP_415882719.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20352.52 Da        Isoelectric Point: 4.9658

>NTDB_id=1096409 ACMXYP_RS16380 WP_415882716.1 3574852..3575409(-) (ssb) [Neptuniibacter sp. QD34_54]
MARGVNKVILVGNLGGDPEVRYMPNGNAVTNVTIATSESWKDKQTGQQQERTEWHRVVFFNRLAEIAGEYMRKGGKVYVE
GALRTRKWQDQSGQDRYTTEIVASEMQLLDSRGGNEGGYAPQQQQGGYAQQPQQQQAPAPQMAPQMAPQAAPQQAPQQRP
APAPQQAPAPQAAPGFDDFDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=1096409 ACMXYP_RS16380 WP_415882716.1 3574852..3575409(-) (ssb) [Neptuniibacter sp. QD34_54]
ATGGCACGTGGTGTTAATAAAGTAATTTTGGTGGGCAATCTGGGTGGAGACCCAGAAGTACGTTATATGCCAAATGGCAA
TGCTGTAACTAATGTAACCATCGCAACGTCTGAATCATGGAAAGATAAGCAGACGGGCCAGCAGCAAGAGCGTACTGAAT
GGCACCGTGTGGTATTTTTTAACCGTCTAGCGGAGATCGCTGGCGAGTATATGCGTAAAGGCGGCAAGGTTTACGTTGAA
GGCGCGTTGCGTACCCGTAAATGGCAGGATCAAAGTGGCCAGGATCGTTACACGACTGAGATCGTAGCAAGCGAAATGCA
GTTGCTTGATAGTCGTGGCGGTAACGAAGGTGGCTATGCTCCTCAGCAACAACAGGGTGGTTATGCACAACAGCCACAAC
AGCAGCAAGCACCGGCGCCACAAATGGCACCGCAGATGGCTCCACAAGCTGCGCCTCAGCAAGCTCCTCAGCAGCGTCCT
GCTCCAGCACCGCAGCAAGCGCCTGCACCTCAAGCGGCGCCGGGTTTTGATGATTTTGATGATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.959

100

0.584
  ssb Glaesserella parasuis strain SC1401

56.522

99.459

0.562
  ssb Neisseria gonorrhoeae MS11

52.486

97.838

0.514
  ssb Neisseria meningitidis MC58

50.829

97.838

0.497

Multiple sequence alignment