Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMXYQ_RS16430 Genome accession   NZ_CP180544
Coordinates   3575772..3576329 (-) Length   185 a.a.
NCBI ID   WP_415882716.1    Uniprot ID   -
Organism   Neptuniibacter sp. PT34_22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3570772..3581329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYQ_RS16415 (ACMXYQ_16415) - 3572167..3573915 (+) 1749 WP_415895327.1 type I secretion system permease/ATPase -
  ACMXYQ_RS16420 (ACMXYQ_16420) - 3573893..3575194 (+) 1302 WP_415892750.1 HlyD family type I secretion periplasmic adaptor subunit -
  ACMXYQ_RS16425 (ACMXYQ_16425) grxC 3575326..3575565 (-) 240 WP_415892751.1 glutaredoxin 3 -
  ACMXYQ_RS16430 (ACMXYQ_16430) ssb 3575772..3576329 (-) 558 WP_415882716.1 single-stranded DNA-binding protein Machinery gene
  ACMXYQ_RS16435 (ACMXYQ_16435) uvrA 3576516..3579344 (+) 2829 WP_415895328.1 excinuclease ABC subunit UvrA -
  ACMXYQ_RS16440 (ACMXYQ_16440) - 3579384..3580052 (-) 669 WP_415895329.1 acyltransferase -
  ACMXYQ_RS16445 (ACMXYQ_16445) rplQ 3580168..3580557 (-) 390 WP_415895330.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20352.52 Da        Isoelectric Point: 4.9658

>NTDB_id=1096363 ACMXYQ_RS16430 WP_415882716.1 3575772..3576329(-) (ssb) [Neptuniibacter sp. PT34_22]
MARGVNKVILVGNLGGDPEVRYMPNGNAVTNVTIATSESWKDKQTGQQQERTEWHRVVFFNRLAEIAGEYMRKGGKVYVE
GALRTRKWQDQSGQDRYTTEIVASEMQLLDSRGGNEGGYAPQQQQGGYAQQPQQQQAPAPQMAPQMAPQAAPQQAPQQRP
APAPQQAPAPQAAPGFDDFDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=1096363 ACMXYQ_RS16430 WP_415882716.1 3575772..3576329(-) (ssb) [Neptuniibacter sp. PT34_22]
ATGGCACGTGGTGTTAATAAAGTAATTTTGGTGGGCAATCTGGGTGGAGATCCAGAAGTACGTTATATGCCAAATGGCAA
TGCTGTAACTAATGTAACCATCGCAACGTCTGAATCATGGAAAGATAAGCAGACGGGCCAGCAGCAAGAGCGTACTGAAT
GGCACCGTGTGGTATTTTTTAACCGTCTAGCGGAGATCGCTGGCGAGTATATGCGTAAAGGCGGCAAGGTTTACGTTGAA
GGTGCGTTGCGTACCCGTAAATGGCAGGATCAAAGTGGCCAGGACCGTTACACGACTGAGATCGTAGCAAGCGAAATGCA
GTTGCTTGATAGTCGTGGCGGTAACGAAGGTGGCTATGCTCCTCAGCAACAACAGGGTGGTTATGCGCAACAGCCACAAC
AGCAGCAAGCACCTGCTCCACAAATGGCACCGCAGATGGCTCCACAAGCTGCGCCTCAGCAAGCTCCTCAGCAGCGTCCT
GCTCCAGCACCGCAACAGGCGCCTGCACCTCAAGCGGCACCGGGTTTTGATGATTTTGATGATGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.959

100

0.584
  ssb Glaesserella parasuis strain SC1401

56.522

99.459

0.562
  ssb Neisseria gonorrhoeae MS11

52.486

97.838

0.514
  ssb Neisseria meningitidis MC58

50.829

97.838

0.497

Multiple sequence alignment