Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMXYV_RS16465 Genome accession   NZ_CP180543
Coordinates   3473254..3473808 (-) Length   184 a.a.
NCBI ID   WP_415889519.1    Uniprot ID   -
Organism   Neptuniibacter sp. SY11_33     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3468254..3478808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYV_RS16435 (ACMXYV_16435) glp 3468382..3469596 (-) 1215 WP_415889513.1 gephyrin-like molybdotransferase Glp -
  ACMXYV_RS16440 (ACMXYV_16440) moaB 3469606..3470142 (-) 537 WP_415889514.1 molybdenum cofactor biosynthesis protein B -
  ACMXYV_RS16445 (ACMXYV_16445) moaA 3470195..3471199 (-) 1005 WP_415889515.1 GTP 3',8-cyclase MoaA -
  ACMXYV_RS16450 (ACMXYV_16450) - 3471296..3471673 (+) 378 WP_415889516.1 SirB2 family protein -
  ACMXYV_RS16455 (ACMXYV_16455) rfbD 3471695..3472606 (-) 912 WP_415889517.1 dTDP-4-dehydrorhamnose reductase -
  ACMXYV_RS16460 (ACMXYV_16460) grxC 3472807..3473046 (-) 240 WP_415889518.1 glutaredoxin 3 -
  ACMXYV_RS16465 (ACMXYV_16465) ssb 3473254..3473808 (-) 555 WP_415889519.1 single-stranded DNA-binding protein Machinery gene
  ACMXYV_RS16470 (ACMXYV_16470) uvrA 3473995..3476823 (+) 2829 WP_415889520.1 excinuclease ABC subunit UvrA -
  ACMXYV_RS16475 (ACMXYV_16475) - 3476863..3477531 (-) 669 WP_415889521.1 acyltransferase -
  ACMXYV_RS16480 (ACMXYV_16480) rplQ 3477646..3478035 (-) 390 WP_415889522.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20224.39 Da        Isoelectric Point: 4.9658

>NTDB_id=1096340 ACMXYV_RS16465 WP_415889519.1 3473254..3473808(-) (ssb) [Neptuniibacter sp. SY11_33]
MARGVNKVILVGNLGGDPEVRYMPNGNAVTNVTIATSESWKDKQTGQQQERTEWHRVVFFNRLAEIAGEYMRKGGKVYVE
GALRTRKWQDQSGQDRYTTEIVASEMQLLDSRGGNEGGYAPQQQQGGYAQQPQQQAPAPQMAPQMAPQAAPQQAPQQRPA
PAPQQAPAPQAAPGFDDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=1096340 ACMXYV_RS16465 WP_415889519.1 3473254..3473808(-) (ssb) [Neptuniibacter sp. SY11_33]
ATGGCACGTGGTGTTAATAAAGTAATTTTGGTGGGCAATCTGGGTGGAGATCCAGAAGTACGTTATATGCCAAATGGCAA
TGCTGTAACTAATGTAACCATCGCAACGTCTGAATCATGGAAAGATAAGCAGACGGGCCAACAGCAAGAGCGTACTGAAT
GGCACCGTGTGGTATTTTTTAACCGTCTAGCGGAGATCGCTGGCGAGTATATGCGTAAAGGCGGCAAAGTTTACGTTGAA
GGTGCGTTACGTACCCGTAAATGGCAGGATCAGAGTGGTCAGGATCGTTACACCACTGAGATCGTAGCAAGCGAAATGCA
GTTGCTTGATAGTCGTGGCGGTAATGAAGGCGGCTATGCTCCCCAGCAGCAACAGGGTGGTTATGCACAACAGCCACAGC
AGCAAGCACCGGCTCCACAAATGGCACCGCAGATGGCTCCACAAGCTGCGCCTCAACAAGCTCCTCAGCAGCGTCCTGCC
CCAGCACCGCAGCAGGCTCCAGCGCCTCAGGCTGCACCCGGCTTTGATGATTTTGATGATGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.15

100

0.571
  ssb Glaesserella parasuis strain SC1401

56.522

100

0.565
  ssb Neisseria gonorrhoeae MS11

52.222

97.826

0.511
  ssb Neisseria meningitidis MC58

48.889

97.826

0.478

Multiple sequence alignment