Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   ACMXYV_RS08175 Genome accession   NZ_CP180543
Coordinates   1744698..1745456 (+) Length   252 a.a.
NCBI ID   WP_415891282.1    Uniprot ID   -
Organism   Neptuniibacter sp. SY11_33     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1739698..1750456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYV_RS08145 (ACMXYV_08145) - 1740007..1740408 (-) 402 WP_415891276.1 lysozyme inhibitor LprI family protein -
  ACMXYV_RS08150 (ACMXYV_08150) - 1740514..1741050 (-) 537 WP_415891277.1 hypothetical protein -
  ACMXYV_RS08155 (ACMXYV_08155) - 1741328..1741654 (+) 327 WP_415891278.1 hypothetical protein -
  ACMXYV_RS08160 (ACMXYV_08160) - 1742169..1743284 (+) 1116 WP_415891279.1 hypothetical protein -
  ACMXYV_RS08165 (ACMXYV_08165) - 1743456..1743944 (+) 489 WP_415891280.1 paraquat-inducible protein A -
  ACMXYV_RS08170 (ACMXYV_08170) - 1743994..1744563 (+) 570 WP_415891281.1 uracil-DNA glycosylase -
  ACMXYV_RS08175 (ACMXYV_08175) ideA 1744698..1745456 (+) 759 WP_415891282.1 endonuclease Regulator
  ACMXYV_RS08180 (ACMXYV_08180) - 1745488..1749129 (-) 3642 WP_415891283.1 response regulator -
  ACMXYV_RS08185 (ACMXYV_08185) - 1749154..1750380 (-) 1227 WP_415891284.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 28917.03 Da        Isoelectric Point: 9.4007

>NTDB_id=1096332 ACMXYV_RS08175 WP_415891282.1 1744698..1745456(+) (ideA) [Neptuniibacter sp. SY11_33]
MYKYLPIALLMIPGLALAEHPKSFGSAKKILKEIYADNQQSFYCGCDYNAQGKKLVPDLKSCGYSPRKNANRAKRIEWEH
VMPAWAFGHQLQCWQDGGRKACKKNPNFKKMESDLHNLVPAIGEVNGDRSNFSFTQLAGEPRVYGQCDMEVDFKQRKVEP
AEHRRGDIARTYFYMRDQYGVRISNKQEKLFNAWAKLDPVDQWELERNRMITRIQGNTNPYVVAPTDSVKLAESTTEQNG
LLSRLKTALSMD

Nucleotide


Download         Length: 759 bp        

>NTDB_id=1096332 ACMXYV_RS08175 WP_415891282.1 1744698..1745456(+) (ideA) [Neptuniibacter sp. SY11_33]
ATGTACAAGTACCTTCCTATTGCTCTTCTAATGATCCCAGGCTTAGCCTTAGCTGAGCATCCTAAGTCTTTCGGCAGTGC
CAAAAAGATTCTGAAAGAGATATACGCAGATAACCAGCAGAGCTTTTATTGTGGATGTGACTACAACGCCCAAGGTAAAA
AGTTGGTGCCAGACTTAAAATCCTGTGGTTACTCACCACGTAAAAACGCGAATAGAGCAAAGCGTATTGAGTGGGAGCAC
GTAATGCCGGCTTGGGCTTTTGGTCATCAATTGCAATGTTGGCAAGACGGTGGTCGTAAAGCTTGTAAAAAGAACCCTAA
TTTCAAGAAGATGGAATCTGACCTTCATAACCTTGTGCCTGCAATTGGTGAGGTGAATGGTGATCGCTCTAATTTCAGCT
TCACACAATTAGCGGGTGAACCGCGTGTTTATGGGCAATGTGATATGGAAGTTGATTTTAAGCAGCGTAAGGTCGAGCCA
GCTGAACATCGCCGTGGCGACATTGCTCGTACTTACTTTTATATGCGCGATCAGTATGGCGTTCGTATCAGTAATAAGCA
GGAAAAGCTGTTTAATGCTTGGGCAAAGCTAGATCCTGTTGATCAATGGGAGTTAGAGCGCAATCGTATGATTACCCGAA
TCCAAGGCAATACAAACCCTTATGTTGTTGCGCCAACTGACTCAGTAAAGTTGGCGGAATCAACTACGGAGCAGAATGGT
TTATTGTCCCGCCTAAAAACTGCATTGAGCATGGATTAG

Domains

Predicted by InterproScan.

Endonuclease I (Endonuclease_1)

(34-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

60.369

86.111

0.52
  dns Vibrio parahaemolyticus RIMD 2210633

58.296

88.492

0.516
  dns Aliivibrio fischeri ES114

56.502

88.492

0.5
  dns Vibrio cholerae strain A1552

55.804

88.889

0.496
  dns Campylobacter jejuni RM1221

44.393

84.921

0.377

Multiple sequence alignment