Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMZ68_RS17055 Genome accession   NZ_CP180522
Coordinates   3560224..3560811 (-) Length   195 a.a.
NCBI ID   WP_086355275.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AP5091     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3555224..3565811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMZ68_RS17030 (ACMZ68_17030) - 3555239..3556738 (+) 1500 WP_017402825.1 PLP-dependent aminotransferase family protein -
  ACMZ68_RS17035 (ACMZ68_17035) - 3556803..3558245 (-) 1443 WP_002117418.1 amino acid permease -
  ACMZ68_RS17040 (ACMZ68_17040) ydcN 3558551..3559099 (-) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  ACMZ68_RS17045 (ACMZ68_17045) - 3559168..3559863 (+) 696 WP_005066893.1 AzlC family ABC transporter permease -
  ACMZ68_RS17050 (ACMZ68_17050) - 3559860..3560183 (+) 324 WP_002117414.1 AzlD domain-containing protein -
  ACMZ68_RS17055 (ACMZ68_17055) ssb 3560224..3560811 (-) 588 WP_086355275.1 single-stranded DNA-binding protein Machinery gene
  ACMZ68_RS17060 (ACMZ68_17060) yajR 3560863..3562227 (-) 1365 WP_023187735.1 MFS transporter -
  ACMZ68_RS17065 (ACMZ68_17065) - 3562374..3563456 (-) 1083 WP_005066886.1 DUF475 domain-containing protein -
  ACMZ68_RS17070 (ACMZ68_17070) tenA 3563719..3564393 (+) 675 WP_068564505.1 thiaminase II -
  ACMZ68_RS17075 (ACMZ68_17075) - 3564460..3564831 (+) 372 WP_068564506.1 MerR family transcriptional regulator -
  ACMZ68_RS17080 (ACMZ68_17080) - 3564935..3565741 (+) 807 WP_069141304.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21226.01 Da        Isoelectric Point: 6.4822

>NTDB_id=1096209 ACMZ68_RS17055 WP_086355275.1 3560224..3560811(-) (ssb) [Acinetobacter pittii strain AP5091]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGSQG
SFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1096209 ACMZ68_RS17055 WP_086355275.1 3560224..3560811(-) (ssb) [Acinetobacter pittii strain AP5091]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACTGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGTGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAACAATAACAACCAAGGTGGCGGCTACGGCCAAAACAGCGGTGGTTATGGTAGCCAAGGT
AGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCTCCGCAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.899

100

0.405
  ssb Neisseria gonorrhoeae MS11

38.384

100

0.39

Multiple sequence alignment