Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   ACMZ68_RS16400 Genome accession   NZ_CP180522
Coordinates   3432743..3436597 (-) Length   1284 a.a.
NCBI ID   WP_415871443.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AP5091     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3427743..3441597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMZ68_RS16365 (ACMZ68_16365) lip 3428482..3429423 (+) 942 WP_415872212.1 lipase family alpha/beta hydrolase -
  ACMZ68_RS16370 (ACMZ68_16370) rplS 3429475..3429843 (-) 369 WP_002116654.1 50S ribosomal protein L19 -
  ACMZ68_RS16375 (ACMZ68_16375) trmD 3430063..3430818 (-) 756 WP_086265002.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACMZ68_RS16380 (ACMZ68_16380) rimM 3430861..3431409 (-) 549 WP_002116736.1 ribosome maturation factor RimM -
  ACMZ68_RS16385 (ACMZ68_16385) rpsP 3431429..3431680 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  ACMZ68_RS16390 (ACMZ68_16390) pilE 3431828..3432253 (-) 426 WP_086265003.1 type IV pilin protein Machinery gene
  ACMZ68_RS16395 (ACMZ68_16395) pilY2 3432250..3432732 (-) 483 WP_415871442.1 type IV pilin protein Machinery gene
  ACMZ68_RS16400 (ACMZ68_16400) pilY1 3432743..3436597 (-) 3855 WP_415871443.1 PilC/PilY family type IV pilus protein Machinery gene
  ACMZ68_RS16405 (ACMZ68_16405) pilX 3436609..3437418 (-) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACMZ68_RS16410 (ACMZ68_16410) pilW 3437415..3438416 (-) 1002 WP_415871444.1 PilW family protein Machinery gene
  ACMZ68_RS16415 (ACMZ68_16415) pilV 3438416..3438976 (-) 561 WP_078219781.1 type IV pilus modification protein PilV Machinery gene
  ACMZ68_RS16420 (ACMZ68_16420) fimU 3438970..3439443 (-) 474 WP_005067119.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACMZ68_RS16425 (ACMZ68_16425) ispH 3439613..3440563 (-) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACMZ68_RS16430 (ACMZ68_16430) gmk 3440687..3441316 (+) 630 WP_415871445.1 guanylate kinase -

Sequence

Protein


Download         Length: 1284 a.a.        Molecular weight: 138035.50 Da        Isoelectric Point: 7.7515

>NTDB_id=1096199 ACMZ68_RS16400 WP_415871443.1 3432743..3436597(-) (pilY1) [Acinetobacter pittii strain AP5091]
MKLKLKNFKPNNLWYAICSSSVAFTWLMTSSVVQASDLQIYASPTAGKKTIVMMLDTSGSMTNNSYGENRLAMLKNGMNA
FLASNNPVLNDTRVGLGNFSANGDSRSGQVLVAAAPLGDASTLNTVGSQRYKLKQAVANLTAGGSTPSAHAYAEAAAYLM
GTTTYSEANYAIRKDSYIKRVRKSDNRTEYSYCTNYRDSQIDTTNLWQPCRSNNYWSNWSTSNPGVDTATAYDTSSDWTY
SYTYYYTTFNYAVANADSGIPKSKSNDTASNPNIVVDRNASNLNAIYQSPLPAVANRQSCDGQGIYFLSDGEPNNTTNTR
SATVMSTALGSTLGANFTCSGGLSNTTADSGWACMGEFAKRLFDKTKNPAGVSIQTAFVGFGSDFSSLSSSDVKNACRLS
SRTQSDRKSDDNCSPNQTTNAVTAPGYGNGGFFPTQSAQGVTDSVIAFITNIGKVPLEPLTTGAISVPYDALNPKNLQEY
GYLRAFEPNPANAYLTWRGNLKKYHVVLSGTNAGAFEANTGGLVYNATGAFRTGTKDYWNSSTYNDGGKVFFGGSYAKVP
LPIAGQNETRDEEGNITKYYYAVQTKIRNLFTDVSAVASDGSLTKLSTSGTNLLKIPATPPEGTNPFDSVANTASYVLGK
FNASTGQDILKAFPISLKLKILNYLGYSTDISATTLPSSLVTSNEPYLSMGGSIHSLPVQLTYNGTLDENGNLTSAREQS
ILYGTMEGGLHIVDASTGVEQMAFVPADILNDPVASKALVVGQSDASAPAHGMDGAWVSDPAYSITTTGSGSSAVSKVTA
KQMNIYGGMRMGGSSYYGLNVLNPASPKLLFRVGADQTDYSRMGQSWSKPVLANIRYNGVIKRVMIVAGGYDQCYENPNI
TLSNSCFTNGKAKGNAVYIIDAKTGQRLWWTSDTGSNIDNSNMKHSIVSRISTLDRDADGLVDHLYFGDLGGQIFRIDLN
NNQTKTNSTYSSFGVRVVRLANLATNDSTYDASNDYTAGHAPRFYEPPTVTIHDYGIRTFITVGIASGDRSTPLDVYPLT
GREGMSPSTALSGRPVNNVYGIIDKDFIKKNLMSLTDSQLETKDITRSTLRKNPQILRSGETRVAQIFFPNTGAGQNGWY
RSLSSMSDGTEKANNSFRIKGGLKAFEEPMAITGTLIVPVYDPQGTGIVAADPCLPRVVGETDQQTYCLPFGACLNSDGT
INRDKEEDSGFQTQTGSNCPAGVSECNKNVIGSGIRGVAFVPKRDEPPVTNSCGKLQLAGNESGTGEWQCTSHLVPTRWY
ERYR

Nucleotide


Download         Length: 3855 bp        

>NTDB_id=1096199 ACMZ68_RS16400 WP_415871443.1 3432743..3436597(-) (pilY1) [Acinetobacter pittii strain AP5091]
GTGAAACTAAAATTGAAGAATTTTAAGCCAAATAATTTATGGTATGCCATCTGTTCGAGTTCAGTTGCTTTTACATGGCT
AATGACAAGCTCCGTTGTGCAGGCGAGTGATTTACAAATTTATGCTTCACCTACAGCTGGTAAAAAAACCATTGTGATGA
TGTTGGATACATCAGGAAGTATGACCAACAATAGTTATGGCGAAAACCGTCTGGCTATGCTTAAAAATGGTATGAATGCT
TTTTTAGCAAGTAATAATCCTGTTTTAAATGACACTCGTGTGGGGTTGGGAAATTTCTCTGCAAATGGTGATAGCCGAAG
TGGGCAGGTTCTAGTGGCTGCTGCTCCTTTAGGAGATGCGAGTACTTTAAATACAGTGGGTTCTCAACGTTATAAATTAA
AACAGGCTGTTGCAAATTTAACTGCTGGCGGGTCAACGCCTTCAGCACATGCTTATGCGGAAGCTGCTGCTTATTTGATG
GGCACAACGACCTACTCAGAGGCAAATTATGCCATTCGAAAAGATAGCTATATAAAGCGTGTGCGAAAATCTGATAATAG
AACGGAATACTCATATTGTACGAATTATCGCGATTCACAAATCGATACTACAAATCTATGGCAACCTTGTCGCTCTAATA
ACTATTGGAGTAACTGGTCAACTTCTAATCCGGGTGTGGATACGGCAACTGCTTATGATACTTCGTCGGATTGGACCTAT
TCTTATACTTATTACTACACCACCTTTAATTATGCTGTAGCAAATGCAGATAGTGGTATCCCAAAATCAAAATCAAATGA
TACAGCTAGCAATCCGAATATTGTTGTAGATAGAAATGCCTCTAATTTAAATGCCATTTACCAATCTCCTTTGCCTGCGG
TGGCCAATCGTCAAAGCTGTGATGGGCAGGGTATTTACTTTTTATCAGATGGTGAGCCGAACAATACAACAAATACACGT
TCGGCAACCGTGATGTCGACTGCTTTAGGTAGTACTTTGGGAGCAAATTTTACTTGTTCTGGAGGTTTATCTAACACGAC
AGCAGACTCTGGTTGGGCCTGTATGGGGGAATTTGCAAAAAGATTATTTGATAAAACAAAAAATCCGGCTGGAGTTTCTA
TTCAAACAGCATTTGTCGGTTTTGGTAGTGACTTTTCTAGTTTAAGTTCTTCTGATGTAAAAAATGCCTGTCGTTTAAGT
TCGAGAACCCAATCTGATCGTAAAAGTGATGATAATTGTTCGCCGAATCAGACCACAAATGCGGTCACTGCACCTGGTTA
TGGAAATGGAGGCTTTTTCCCTACCCAAAGTGCGCAAGGTGTAACAGACAGCGTTATCGCATTTATTACTAACATCGGAA
AAGTTCCTTTAGAACCCTTAACCACAGGAGCTATCTCTGTTCCTTATGATGCACTAAATCCTAAAAATTTACAGGAATAT
GGTTACTTACGTGCTTTTGAGCCAAATCCAGCAAATGCTTATTTAACTTGGCGAGGCAACCTAAAAAAATACCATGTTGT
TTTATCGGGAACAAATGCTGGTGCTTTTGAAGCGAATACTGGTGGGTTGGTTTACAACGCAACTGGGGCATTTAGAACGG
GTACAAAAGATTATTGGAATAGCTCTACTTATAATGATGGAGGTAAAGTCTTTTTTGGTGGTTCATATGCAAAAGTTCCT
TTACCAATTGCTGGACAAAATGAAACACGTGATGAAGAAGGAAATATCACAAAATATTATTACGCAGTACAAACTAAAAT
CCGCAACTTATTTACTGATGTTTCCGCCGTCGCATCAGATGGTAGCTTAACGAAGCTATCAACTTCTGGAACTAATTTGC
TAAAAATTCCAGCTACTCCACCAGAAGGAACTAATCCTTTTGATAGTGTGGCTAATACAGCAAGTTATGTTTTAGGAAAA
TTTAATGCATCAACGGGACAAGATATTTTAAAAGCTTTCCCGATTAGCTTGAAATTAAAAATATTAAATTATCTAGGTTA
CTCAACTGATATTAGCGCTACGACTTTACCTTCGTCATTAGTTACATCGAATGAACCATATTTATCGATGGGCGGTAGTA
TTCACTCTTTACCGGTACAGCTTACCTATAATGGAACATTAGATGAAAATGGGAATTTAACATCTGCGCGTGAACAATCC
ATTCTCTATGGAACGATGGAAGGTGGTCTGCATATTGTGGATGCCTCAACTGGCGTAGAACAAATGGCTTTCGTTCCTGC
CGATATATTAAATGATCCAGTTGCATCAAAAGCTTTAGTGGTGGGCCAAAGTGATGCTTCAGCCCCTGCTCACGGTATGG
ATGGGGCTTGGGTATCTGACCCTGCATATAGTATTACTACAACAGGAAGCGGTAGCTCAGCAGTATCAAAAGTAACTGCA
AAGCAAATGAATATTTATGGTGGTATGCGAATGGGGGGCAGCAGCTATTATGGCTTAAATGTCTTAAATCCTGCTTCACC
TAAGCTCCTGTTTAGAGTAGGAGCAGATCAAACTGATTATAGTCGTATGGGGCAGAGTTGGTCTAAACCTGTACTTGCAA
ATATACGTTATAACGGGGTTATTAAACGAGTTATGATTGTTGCTGGTGGCTACGACCAATGTTATGAAAACCCGAATATT
ACTTTGAGTAACTCTTGCTTTACGAATGGAAAAGCAAAAGGAAACGCTGTTTATATTATTGATGCTAAAACTGGGCAGCG
CTTATGGTGGACTAGTGATACAGGCTCTAATATAGATAACTCTAATATGAAGCACAGTATTGTTAGTCGCATTAGTACCT
TAGATCGAGATGCTGATGGTTTGGTAGATCATTTATATTTTGGCGATTTAGGCGGGCAAATTTTCCGTATCGATCTTAAT
AATAACCAGACAAAAACAAATTCAACTTATAGCAGTTTCGGGGTGCGAGTTGTTCGATTAGCTAATTTGGCAACGAATGA
TTCAACTTACGATGCCTCGAACGACTATACTGCTGGGCATGCACCGCGGTTTTATGAACCGCCAACAGTGACAATTCACG
ATTACGGAATCCGCACTTTTATTACGGTAGGTATTGCTTCAGGTGACCGTAGTACACCGTTAGATGTTTATCCGCTTACA
GGTCGTGAGGGGATGTCACCGAGCACGGCATTAAGCGGAAGACCTGTAAACAACGTTTATGGAATTATCGATAAAGACTT
TATTAAAAAGAATTTAATGTCTTTGACTGATAGCCAACTTGAAACAAAAGATATTACTCGATCGACGCTTCGAAAAAATC
CACAAATTTTACGATCTGGAGAAACACGAGTAGCACAGATTTTCTTTCCCAACACTGGGGCGGGACAAAATGGTTGGTAT
CGCTCGCTTTCTAGTATGAGCGATGGTACCGAGAAAGCTAATAATAGTTTCCGTATTAAAGGTGGGCTAAAAGCTTTTGA
AGAGCCTATGGCAATTACAGGGACTTTAATTGTGCCTGTTTATGACCCGCAGGGAACAGGTATTGTAGCGGCAGACCCAT
GTTTACCCCGTGTAGTAGGTGAAACGGATCAACAGACTTACTGTTTACCATTTGGTGCCTGTCTTAATTCTGATGGAACG
ATTAATCGTGATAAAGAAGAGGATAGCGGGTTTCAAACACAAACGGGTAGTAACTGCCCAGCAGGAGTTTCTGAATGTAA
TAAAAACGTTATTGGCTCAGGTATCCGTGGCGTAGCATTTGTGCCAAAAAGAGATGAACCTCCAGTGACTAATAGTTGTG
GAAAATTACAACTGGCTGGAAACGAGAGTGGAACAGGCGAGTGGCAGTGTACAAGTCATTTAGTTCCTACGCGTTGGTAT
GAGCGTTATCGCTAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(715-965)

von Willebrand factor type A domain (VWA_2)

(51-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

84.496

100

0.849

Multiple sequence alignment