Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   ACMZ68_RS16410 Genome accession   NZ_CP180522
Coordinates   3437415..3438416 (-) Length   333 a.a.
NCBI ID   WP_415871444.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AP5091     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3432415..3443416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMZ68_RS16400 (ACMZ68_16400) pilY1 3432743..3436597 (-) 3855 WP_415871443.1 PilC/PilY family type IV pilus protein Machinery gene
  ACMZ68_RS16405 (ACMZ68_16405) pilX 3436609..3437418 (-) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACMZ68_RS16410 (ACMZ68_16410) pilW 3437415..3438416 (-) 1002 WP_415871444.1 PilW family protein Machinery gene
  ACMZ68_RS16415 (ACMZ68_16415) pilV 3438416..3438976 (-) 561 WP_078219781.1 type IV pilus modification protein PilV Machinery gene
  ACMZ68_RS16420 (ACMZ68_16420) fimU 3438970..3439443 (-) 474 WP_005067119.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACMZ68_RS16425 (ACMZ68_16425) ispH 3439613..3440563 (-) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACMZ68_RS16430 (ACMZ68_16430) gmk 3440687..3441316 (+) 630 WP_415871445.1 guanylate kinase -
  ACMZ68_RS16435 (ACMZ68_16435) rpoZ 3441389..3441667 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  ACMZ68_RS16440 (ACMZ68_16440) - 3441706..3441861 (+) 156 Protein_3205 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35782.49 Da        Isoelectric Point: 6.6395

>NTDB_id=1096201 ACMZ68_RS16410 WP_415871444.1 3437415..3438416(-) (pilW) [Acinetobacter pittii strain AP5091]
MAHSFVLWKQRGFTLIELMVALALGLILVAAAIQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTGSTATNNNNVNFVPNVGTNTYIADTLLSRGAGDTVSTVSNHWKGLSNIQNSSNAAVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSAVATAQPTTVAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQISVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1096201 ACMZ68_RS16410 WP_415871444.1 3437415..3438416(-) (pilW) [Acinetobacter pittii strain AP5091]
ATGGCTCACTCATTTGTATTATGGAAGCAGCGAGGCTTTACATTAATTGAGCTGATGGTTGCATTGGCTTTAGGTCTAAT
TTTAGTAGCCGCGGCGATTCAATTATTTATTGGTGGACTTCTATCAAGCCGTCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTTGGTTTGGAATATATTGCCCGTGATATACGGCTTCTAAATTATGGAAATGTAACCAACCCAATATTA
ACTGATACAACCCCTTGGGGCGGTGTTGTATTAACTGGCTCAACTGCAACCAATAACAACAATGTTAATTTTGTCCCTAA
CGTTGGAACAAATACTTATATTGCTGACACATTACTTAGTCGTGGTGCAGGGGATACGGTGAGTACTGTGAGTAATCACT
GGAAAGGTCTTTCAAATATACAGAACAGTTCAAATGCTGCTGTGCAAAGTGATCAGCTGACTATCCAATTTATTGCACCT
ACAAATATGACCAATTGTGAAGGTGTAAATGTACTTGCAGGTGATTTAATTGTAGAGCGTTATTTTTTACGTCTGGATAG
CAATGGTAGTTCCCAGCAAGATTATGCACTTGCATGTGATGCAAATACTCCCTCTGCTGTAGCCACAGCTCAACCGACCA
CTGTTGCTGGGTTAGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGATCATTTCCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTATTATACCATTCCCCAATATCGCGCTGCTGCACAGGCTGCCCGAGATGCCACACCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATATCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAAGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTGCATGCTTCTGATAATACAACTCGATTCTTACGCCGCACTTATAAC
TTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

85.285

100

0.853

Multiple sequence alignment