Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilV   Type   Machinery gene
Locus tag   ACMZ68_RS16415 Genome accession   NZ_CP180522
Coordinates   3438416..3438976 (-) Length   186 a.a.
NCBI ID   WP_078219781.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AP5091     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3433416..3443976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMZ68_RS16405 (ACMZ68_16405) pilX 3436609..3437418 (-) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACMZ68_RS16410 (ACMZ68_16410) pilW 3437415..3438416 (-) 1002 WP_415871444.1 PilW family protein Machinery gene
  ACMZ68_RS16415 (ACMZ68_16415) pilV 3438416..3438976 (-) 561 WP_078219781.1 type IV pilus modification protein PilV Machinery gene
  ACMZ68_RS16420 (ACMZ68_16420) fimU 3438970..3439443 (-) 474 WP_005067119.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACMZ68_RS16425 (ACMZ68_16425) ispH 3439613..3440563 (-) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACMZ68_RS16430 (ACMZ68_16430) gmk 3440687..3441316 (+) 630 WP_415871445.1 guanylate kinase -
  ACMZ68_RS16435 (ACMZ68_16435) rpoZ 3441389..3441667 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  ACMZ68_RS16440 (ACMZ68_16440) - 3441706..3441861 (+) 156 Protein_3205 hypothetical protein -

Sequence


Protein


Download         Length: 186 a.a.        Molecular weight: 19853.88 Da        Isoelectric Point: 7.9110

>NTDB_id=1096202 ACMZ68_RS16415 WP_078219781.1 3438416..3438976(-) (pilV) [Acinetobacter pittii strain AP5091]
MLMQGSKQKAQVGVGLLEVLVALILIAIGVLGYVALQVRAMDASSEALSKSQAIMIMRGLAENIRVNSSQASQYPAFVRS
YSNYSSTTAAPTLCFNAACTPSQLAQFDAYQAARNADQLGMKITMTNCPGVTSTMAQQRQCLFVFWGKTAPVITTNEGVT
SADVSSCMSTNGVYVNNSNCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=1096202 ACMZ68_RS16415 WP_078219781.1 3438416..3438976(-) (pilV) [Acinetobacter pittii strain AP5091]
ATGTTAATGCAGGGCTCTAAACAAAAGGCTCAAGTTGGGGTGGGTTTATTAGAAGTGTTGGTTGCCTTAATTTTAATTGC
GATAGGGGTTTTAGGATATGTTGCCTTGCAAGTCCGTGCTATGGATGCTTCTTCAGAGGCATTAAGCAAATCTCAAGCGA
TTATGATCATGAGAGGATTAGCAGAAAACATTCGCGTAAATAGTTCTCAAGCTAGTCAGTATCCCGCATTTGTCCGTAGT
TATAGCAATTATTCATCTACCACCGCAGCTCCTACGTTGTGTTTCAATGCAGCTTGTACACCTTCTCAGCTTGCCCAATT
TGATGCATATCAAGCAGCAAGAAATGCTGATCAACTTGGCATGAAAATTACAATGACAAATTGCCCAGGGGTTACAAGCA
CAATGGCCCAGCAGAGGCAATGTTTGTTTGTTTTTTGGGGAAAAACCGCTCCAGTAATTACAACAAATGAGGGAGTCACG
AGCGCGGATGTGTCGAGCTGTATGAGTACAAATGGCGTTTATGTCAATAATTCGAACTGTTTAATGATGGAGGCATATTA
A

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

84.409

100

0.844


Multiple sequence alignment