Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMXYJ_RS04830 Genome accession   NZ_CP180480
Coordinates   1059095..1059625 (+) Length   176 a.a.
NCBI ID   WP_008145505.1    Uniprot ID   A0A1P8EWL9
Organism   Pseudomonas sp. LT1P18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1054095..1064625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYJ_RS04815 bfr 1054133..1054597 (+) 465 WP_007943775.1 bacterioferritin -
  ACMXYJ_RS04820 uvrA 1054662..1057496 (-) 2835 WP_415758951.1 excinuclease ABC subunit UvrA -
  ACMXYJ_RS04825 - 1057688..1059085 (+) 1398 WP_415758952.1 MFS transporter -
  ACMXYJ_RS04830 ssb 1059095..1059625 (+) 531 WP_008145505.1 single-stranded DNA-binding protein Machinery gene
  ACMXYJ_RS04835 - 1059692..1061896 (-) 2205 WP_415758953.1 OsmC domain/YcaO domain-containing protein -
  ACMXYJ_RS04840 - 1062050..1062604 (-) 555 WP_415758954.1 cysteine hydrolase family protein -
  ACMXYJ_RS04845 - 1062706..1063698 (+) 993 WP_415758955.1 GlxA family transcriptional regulator -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19441.60 Da        Isoelectric Point: 5.9314

>NTDB_id=1096062 ACMXYJ_RS04830 WP_008145505.1 1059095..1059625(+) (ssb) [Pseudomonas sp. LT1P18]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAAPQQSRQAPAPQQAA
PQPAPDFDSFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1096062 ACMXYJ_RS04830 WP_008145505.1 1059095..1059625(+) (ssb) [Pseudomonas sp. LT1P18]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAAGTTGCAGAGATCGCCGGCGAGTACCTGCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGGGGCAATAACTACCAGCAGTCCGCCCCAGCCC
CACGCCAGCAGGCTCCGCGTCCGCAGCAGTCGGCAGCACCGCAACAGTCGCGTCAGGCTCCGGCTCCACAGCAGGCTGCC
CCGCAACCGGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1P8EWL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.333

100

0.597
  ssb Glaesserella parasuis strain SC1401

46.632

100

0.511
  ssb Neisseria meningitidis MC58

46.667

100

0.477
  ssb Neisseria gonorrhoeae MS11

46.154

100

0.477

Multiple sequence alignment