Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACMYQ0_RS14080 Genome accession   NZ_CP180477
Coordinates   3022218..3023555 (+) Length   445 a.a.
NCBI ID   WP_415753525.1    Uniprot ID   -
Organism   Pseudomonas leptonychotis strain CCM 8849     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3017218..3028555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMYQ0_RS14055 pgeF 3017350..3018075 (-) 726 WP_415753522.1 peptidoglycan editing factor PgeF -
  ACMYQ0_RS14060 rluD 3018094..3019068 (-) 975 WP_136663143.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACMYQ0_RS14065 - 3019216..3020199 (+) 984 WP_415753523.1 outer membrane protein assembly factor BamD -
  ACMYQ0_RS14070 - 3020397..3020636 (+) 240 WP_405119011.1 PP0621 family protein -
  ACMYQ0_RS14075 pilS 3020626..3022215 (+) 1590 WP_415753524.1 sensor histidine kinase Regulator
  ACMYQ0_RS14080 pilR 3022218..3023555 (+) 1338 WP_415753525.1 sigma-54-dependent transcriptional regulator Regulator
  ACMYQ0_RS14085 thiO 3023625..3024737 (-) 1113 WP_415753526.1 glycine oxidase ThiO -
  ACMYQ0_RS14090 - 3024798..3025298 (+) 501 WP_415753527.1 GspH/FimT family pseudopilin -
  ACMYQ0_RS14095 - 3025394..3025912 (+) 519 WP_415753528.1 GspH/FimT family pseudopilin -
  ACMYQ0_RS14100 pilV 3025899..3026489 (+) 591 WP_415753529.1 type IV pilus modification protein PilV -
  ACMYQ0_RS14105 - 3026486..3027286 (+) 801 WP_415753530.1 PilW family protein -
  ACMYQ0_RS14110 - 3027294..3027797 (+) 504 WP_415753531.1 PilX N-terminal domain-containing pilus assembly protein -
  ACMYQ0_RS14115 - 3027814..3028152 (+) 339 WP_415753532.1 hypothetical protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49808.25 Da        Isoelectric Point: 5.4670

>NTDB_id=1095987 ACMYQ0_RS14080 WP_415753525.1 3022218..3023555(+) (pilR) [Pseudomonas leptonychotis strain CCM 8849]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAKEPFDLCLTDMRLPDGTGLELVQHILQRHPQVPVAM
ITAYGSLDTAINALKAGAFDFLTKPVDLGRLRELVAAALRLRSADGEELPVDSRLLGESPPMKTLRKQILKLARSQAPVY
ISGESGSGKELVARLIHEQGSRSEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQELVVDVRILCATHKDLAGEVAAERFRQDLYYRLNVIELRVPALRERREDITLLADIM
LKRLADGTGLSPAKLDDDALEKLKSYRFPGNVRELENMLERAYTLCEDDRISASDLRLADSSPISENGEANLAQIDNLED
YLEAIERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=1095987 ACMYQ0_RS14080 WP_415753525.1 3022218..3023555(+) (pilR) [Pseudomonas leptonychotis strain CCM 8849]
ATGACCCGCCAGAGAGCCTTGATCGTCGATGATGAACCCGATATTCGTGAGCTCTTGGAGATCACCCTGGGGCGGATGAA
GCTCGACACCCGCAGTGCGCGCAACGTCAAAGAGGCCCGAGAGTGGCTGGCCAAGGAGCCCTTTGACCTGTGCCTGACCG
ATATGCGCCTGCCCGACGGCACGGGCCTAGAGCTGGTACAGCACATTCTGCAGCGCCATCCACAAGTACCGGTTGCGATG
ATCACCGCCTACGGCAGCCTGGACACCGCAATCAATGCACTGAAAGCAGGGGCATTCGATTTTTTGACCAAGCCCGTCGA
CCTCGGGCGCTTGCGCGAACTGGTCGCCGCCGCCTTGCGCCTGCGCAGTGCCGACGGCGAAGAACTACCGGTGGACAGCC
GCCTACTCGGCGAGTCGCCGCCAATGAAAACCCTGCGCAAACAAATCCTCAAACTGGCGCGCAGTCAGGCCCCCGTGTAT
ATCAGCGGTGAGTCCGGTAGCGGCAAAGAACTGGTAGCCCGCCTGATCCACGAGCAGGGCTCGCGCAGCGAACAACCTTT
CGTGCCGGTCAACTGCGGCGCCATTCCTAGCGAGCTGATGGAGAGTGAGTTCTTCGGTCACAAGAAAGGCAGCTTCACCG
GTGCCATCGAAGACAAGCAGGGGTTATTCCAAGCCGCCAATGGCGGCACTCTATTTCTCGATGAGGTGGCCGACCTGCCG
CTGCCGATGCAAGTCAAACTGCTACGCGCGATTCAGGAAAAAGCGGTGCGCGCCGTCGGCGGTCAGCAGGAGCTGGTGGT
TGATGTGCGCATTCTTTGCGCCACCCACAAAGACCTTGCCGGCGAAGTCGCCGCCGAACGCTTCCGCCAAGATCTTTATT
ACCGCCTCAACGTCATCGAGTTACGCGTACCGGCCCTGCGCGAACGCCGCGAAGACATTACGCTGCTGGCCGATATCATG
CTCAAGCGCCTGGCCGACGGAACCGGCCTCAGCCCGGCCAAGTTGGACGACGATGCACTGGAGAAGCTCAAAAGCTACCG
CTTCCCGGGTAACGTACGCGAGCTGGAGAACATGCTTGAGCGCGCTTACACCCTGTGCGAAGACGACCGCATCTCCGCCA
GCGACCTGCGCCTGGCCGACAGCAGCCCTATCAGTGAGAACGGCGAAGCCAACCTCGCCCAGATTGACAACCTGGAGGAC
TACCTAGAAGCCATCGAGCGCAAGCTGATCATGCAGGCCCTGGAAGAAACTCGCTGGAACCGCACCGCAGCTGCTCAGCG
TTTAGGCCTAAGCTTTCGCTCAATGCGCTATCGACTAAAGAAACTTGGTATCGACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

86.067

100

0.861
  pilR Acinetobacter baumannii strain A118

49.673

100

0.512
  luxO Vibrio cholerae strain A1552

37.668

100

0.378

Multiple sequence alignment