Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACMYQ0_RS14075 Genome accession   NZ_CP180477
Coordinates   3020626..3022215 (+) Length   529 a.a.
NCBI ID   WP_415753524.1    Uniprot ID   -
Organism   Pseudomonas leptonychotis strain CCM 8849     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3015626..3027215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMYQ0_RS14055 pgeF 3017350..3018075 (-) 726 WP_415753522.1 peptidoglycan editing factor PgeF -
  ACMYQ0_RS14060 rluD 3018094..3019068 (-) 975 WP_136663143.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACMYQ0_RS14065 - 3019216..3020199 (+) 984 WP_415753523.1 outer membrane protein assembly factor BamD -
  ACMYQ0_RS14070 - 3020397..3020636 (+) 240 WP_405119011.1 PP0621 family protein -
  ACMYQ0_RS14075 pilS 3020626..3022215 (+) 1590 WP_415753524.1 sensor histidine kinase Regulator
  ACMYQ0_RS14080 pilR 3022218..3023555 (+) 1338 WP_415753525.1 sigma-54-dependent transcriptional regulator Regulator
  ACMYQ0_RS14085 thiO 3023625..3024737 (-) 1113 WP_415753526.1 glycine oxidase ThiO -
  ACMYQ0_RS14090 - 3024798..3025298 (+) 501 WP_415753527.1 GspH/FimT family pseudopilin -
  ACMYQ0_RS14095 - 3025394..3025912 (+) 519 WP_415753528.1 GspH/FimT family pseudopilin -
  ACMYQ0_RS14100 pilV 3025899..3026489 (+) 591 WP_415753529.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58589.73 Da        Isoelectric Point: 8.4686

>NTDB_id=1095986 ACMYQ0_RS14075 WP_415753524.1 3020626..3022215(+) (pilS) [Pseudomonas leptonychotis strain CCM 8849]
MSTEFNLSGEQSWRILRLYHLYRLIIGLALALLVSSNLHTDLLEMANPELFRYGSWLYLALNVLIIATVRRPKRLAQIFS
LALVDVILLAGLFYAGGGTPSGIGNLLIVAVAISNILLRGRIGLLIAAVAAIGMIYLTFFLSLSRPAATAQYVQVGAFGA
LCFAAALFVQGLTRRLQASESLAEQRAADVANLEALNGLILQRMRTGILVLDELHRVLLANQGANHLLGHADLTGKILDP
HCPELIKRMQQWSHNPSLRPSSLQAAPDGRVLQPSFIALLRGEYKHTLIFLDDISQIAQQAQQLKLASLGRLTAGIAHEI
RNPLGAISHAAQLLQESEDLEGPDLRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRGSAAPGQ
TLHLQTSSGSIQTRMDPHQLTQVLSNLVENGLRYSAQKNKQGQVWLNLFRDPDSELPVLEVLDDGPGVAEEQLHHLFEPF
YTTENKGTGLGLYISRELCESNQARLDYKLREGGGSCLRITFAHPRKLS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=1095986 ACMYQ0_RS14075 WP_415753524.1 3020626..3022215(+) (pilS) [Pseudomonas leptonychotis strain CCM 8849]
GTGAGCACTGAATTCAACCTAAGCGGGGAGCAAAGCTGGCGAATCCTGCGCCTCTACCACCTGTACCGTTTGATTATTGG
CCTCGCCTTGGCACTGCTGGTATCCAGCAACCTGCACACTGATCTACTTGAGATGGCTAACCCAGAGCTATTTCGTTACG
GCAGTTGGCTGTATCTAGCGCTTAATGTCCTGATCATCGCCACAGTACGTAGACCCAAACGCCTGGCGCAGATTTTCAGT
CTGGCACTGGTCGACGTCATTCTACTCGCCGGCCTGTTCTATGCCGGTGGCGGTACGCCCAGCGGCATCGGCAACTTACT
GATTGTCGCAGTGGCCATCAGCAATATTCTGCTGCGTGGGCGTATCGGCCTACTGATTGCCGCTGTCGCCGCAATCGGCA
TGATTTACCTCACCTTCTTCCTTAGCCTCAGCCGCCCTGCAGCTACAGCCCAGTACGTTCAGGTCGGCGCATTTGGCGCA
CTGTGCTTCGCTGCCGCCTTGTTCGTGCAAGGCCTAACCCGACGCCTGCAAGCCAGCGAAAGCCTTGCAGAGCAGCGTGC
CGCTGATGTGGCCAATCTAGAGGCATTAAACGGCCTGATCCTGCAGCGCATGCGTACAGGCATTCTGGTTCTGGATGAAC
TGCATCGCGTACTGCTGGCCAACCAAGGTGCCAATCACCTGCTAGGGCATGCCGACCTAACGGGCAAAATCCTCGACCCG
CACTGCCCCGAATTGATCAAGCGCATGCAGCAGTGGTCACACAACCCAAGTTTGCGCCCTAGCAGCCTGCAAGCGGCACC
CGATGGCCGTGTATTACAACCGAGCTTTATTGCCCTGCTACGCGGCGAGTACAAACACACACTGATCTTTCTCGACGACA
TCTCACAAATCGCCCAACAAGCGCAGCAACTCAAGCTCGCCTCTCTCGGCCGCCTGACGGCAGGTATCGCCCACGAAATC
CGTAACCCCCTGGGTGCCATCAGTCACGCCGCACAACTGCTGCAAGAGTCAGAAGATCTGGAGGGGCCAGACCTGCGCCT
GGCACAGATCATCCAGGATCACTCACGGCGCATGAACCTGGTCATCGAGAACGTTTTGCAGCTCTCGCGGCGCCGTCAAG
CCGAGCCGCAACTGCTTGACCTGAAATACTGGCTGCACCGTTTTGCCAGCGAATTTCGTGGCAGCGCAGCGCCGGGCCAG
ACCCTGCATCTTCAAACCAGCAGCGGTAGCATTCAGACGCGAATGGACCCCCACCAGCTCACCCAGGTATTAAGCAACTT
GGTGGAAAACGGCCTGCGCTATAGCGCGCAGAAGAACAAACAAGGGCAAGTTTGGCTGAATCTATTCCGCGACCCAGATA
GTGAGCTGCCTGTGCTTGAGGTGTTGGACGATGGCCCTGGCGTCGCCGAGGAACAACTGCACCACTTGTTTGAACCCTTC
TACACCACAGAAAACAAAGGCACCGGCCTGGGCCTGTATATTTCCCGCGAGCTGTGCGAAAGCAATCAGGCGCGCCTTGA
CTATAAACTTCGTGAAGGTGGCGGCAGTTGTCTGCGCATCACCTTCGCCCATCCGCGAAAACTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

67.424

99.811

0.673

Multiple sequence alignment