Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACMXKM_RS05240 | Genome accession | NZ_CP180475 |
| Coordinates | 1114527..1114991 (-) | Length | 154 a.a. |
| NCBI ID | WP_415759795.1 | Uniprot ID | - |
| Organism | Pasteurella multocida strain 200011 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1108410..1154421 | 1114527..1114991 | within | 0 |
Gene organization within MGE regions
Location: 1108410..1154421
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMXKM_RS05180 | - | 1108410..1109399 (+) | 990 | WP_075266281.1 | tyrosine-type recombinase/integrase | - |
| ACMXKM_RS05185 | - | 1109396..1109677 (-) | 282 | WP_071523558.1 | hypothetical protein | - |
| ACMXKM_RS05190 | - | 1109752..1110237 (-) | 486 | WP_415759790.1 | pyruvate kinase | - |
| ACMXKM_RS05195 | - | 1110323..1110622 (-) | 300 | WP_016533427.1 | hypothetical protein | - |
| ACMXKM_RS05200 | - | 1110632..1111165 (-) | 534 | WP_415759953.1 | DUF551 domain-containing protein | - |
| ACMXKM_RS05205 | - | 1111177..1111611 (-) | 435 | WP_415759955.1 | DUF551 domain-containing protein | - |
| ACMXKM_RS05210 | - | 1111614..1112096 (-) | 483 | WP_415760006.1 | class I SAM-dependent methyltransferase | - |
| ACMXKM_RS05215 | - | 1112130..1112420 (-) | 291 | WP_016569997.1 | hypothetical protein | - |
| ACMXKM_RS05220 | - | 1112417..1113016 (-) | 600 | WP_016569996.1 | hypothetical protein | - |
| ACMXKM_RS05225 | - | 1113069..1113857 (-) | 789 | WP_014391448.1 | DUF2303 family protein | - |
| ACMXKM_RS05230 | - | 1113929..1114282 (-) | 354 | WP_016570064.1 | hypothetical protein | - |
| ACMXKM_RS05235 | - | 1114325..1114516 (-) | 192 | WP_319028966.1 | hypothetical protein | - |
| ACMXKM_RS05240 | ssb | 1114527..1114991 (-) | 465 | WP_415759795.1 | single-stranded DNA-binding protein | Machinery gene |
| ACMXKM_RS05245 | - | 1114991..1115650 (-) | 660 | WP_409138899.1 | translocation protein TolB precursor | - |
| ACMXKM_RS05250 | - | 1115637..1116590 (-) | 954 | WP_014391451.1 | recombinase RecT | - |
| ACMXKM_RS05255 | - | 1116592..1116879 (-) | 288 | WP_064964850.1 | hypothetical protein | - |
| ACMXKM_RS05260 | - | 1116892..1117128 (-) | 237 | WP_415759798.1 | hypothetical protein | - |
| ACMXKM_RS05265 | - | 1117100..1117399 (-) | 300 | WP_014391453.1 | hypothetical protein | - |
| ACMXKM_RS05270 | - | 1117466..1117777 (+) | 312 | WP_014390710.1 | hypothetical protein | - |
| ACMXKM_RS05275 | - | 1117839..1118792 (-) | 954 | WP_415760008.1 | KilA-N domain-containing protein | - |
| ACMXKM_RS05280 | - | 1118817..1119143 (-) | 327 | Protein_1034 | Bro-N domain-containing protein | - |
| ACMXKM_RS05285 | - | 1119360..1119623 (-) | 264 | WP_071522857.1 | hypothetical protein | - |
| ACMXKM_RS05290 | - | 1119848..1120078 (-) | 231 | WP_016533507.1 | hypothetical protein | - |
| ACMXKM_RS05295 | - | 1120718..1121098 (-) | 381 | WP_415759958.1 | hypothetical protein | - |
| ACMXKM_RS05300 | - | 1121103..1121555 (-) | 453 | WP_195187226.1 | helix-turn-helix domain-containing protein | - |
| ACMXKM_RS05305 | - | 1121558..1121863 (-) | 306 | WP_195187227.1 | type II toxin-antitoxin system HigB family toxin | - |
| ACMXKM_RS05310 | - | 1121952..1122641 (-) | 690 | WP_064775603.1 | XRE family transcriptional regulator | - |
| ACMXKM_RS05315 | - | 1122769..1122978 (+) | 210 | WP_005720263.1 | helix-turn-helix transcriptional regulator | - |
| ACMXKM_RS05320 | - | 1122999..1123274 (+) | 276 | WP_005756640.1 | hypothetical protein | - |
| ACMXKM_RS05325 | - | 1123332..1124033 (+) | 702 | WP_064775604.1 | phage antirepressor KilAC domain-containing protein | - |
| ACMXKM_RS05330 | - | 1124030..1124383 (+) | 354 | WP_014390722.1 | HNH endonuclease | - |
| ACMXKM_RS05335 | - | 1124385..1125287 (+) | 903 | WP_016533442.1 | hypothetical protein | - |
| ACMXKM_RS05340 | - | 1125287..1125976 (+) | 690 | WP_016533441.1 | replication protein P | - |
| ACMXKM_RS05345 | - | 1125980..1126516 (+) | 537 | WP_014391470.1 | phage N-6-adenine-methyltransferase | - |
| ACMXKM_RS05350 | - | 1126506..1126964 (+) | 459 | WP_016569985.1 | recombination protein NinB | - |
| ACMXKM_RS05355 | - | 1127038..1127250 (+) | 213 | WP_016533468.1 | hypothetical protein | - |
| ACMXKM_RS05360 | - | 1127338..1127940 (+) | 603 | WP_415759810.1 | recombination protein NinG | - |
| ACMXKM_RS05365 | - | 1127942..1128403 (+) | 462 | WP_241952116.1 | antiterminator Q family protein | - |
| ACMXKM_RS05375 | - | 1128729..1129094 (+) | 366 | WP_415759812.1 | phage holin, lambda family | - |
| ACMXKM_RS05380 | - | 1129066..1129650 (+) | 585 | WP_238300475.1 | glycoside hydrolase family 19 protein | - |
| ACMXKM_RS05385 | - | 1129653..1129976 (+) | 324 | WP_238300473.1 | DUF2570 family protein | - |
| ACMXKM_RS05390 | - | 1130188..1130556 (-) | 369 | WP_014391478.1 | helix-turn-helix domain-containing protein | - |
| ACMXKM_RS05395 | - | 1130593..1130853 (-) | 261 | WP_005720780.1 | type II toxin-antitoxin system RelE family toxin | - |
| ACMXKM_RS05400 | - | 1131144..1131620 (+) | 477 | WP_075269225.1 | DUF1441 family protein | - |
| ACMXKM_RS05405 | - | 1131623..1133731 (+) | 2109 | WP_238300231.1 | phage terminase large subunit family protein | - |
| ACMXKM_RS05410 | - | 1133728..1133949 (+) | 222 | WP_014391481.1 | hypothetical protein | - |
| ACMXKM_RS05415 | - | 1133946..1135484 (+) | 1539 | WP_238300232.1 | phage portal protein | - |
| ACMXKM_RS05420 | - | 1135420..1137438 (+) | 2019 | WP_238300233.1 | ClpP-like prohead protease/major capsid protein fusion protein | - |
| ACMXKM_RS05425 | - | 1137511..1137837 (+) | 327 | WP_415759963.1 | DUF2190 family protein | - |
| ACMXKM_RS05430 | - | 1137830..1138123 (+) | 294 | WP_005719722.1 | hypothetical protein | - |
| ACMXKM_RS05435 | - | 1138123..1138674 (+) | 552 | WP_223131947.1 | phage tail protein | - |
| ACMXKM_RS05440 | gpU | 1138671..1139078 (+) | 408 | WP_223131948.1 | phage minor tail U family protein | - |
| ACMXKM_RS05445 | - | 1139075..1139581 (+) | 507 | WP_415759966.1 | phage tail tube protein | - |
| ACMXKM_RS05450 | - | 1139587..1139976 (+) | 390 | WP_016533230.1 | phage minor tail protein G | - |
| ACMXKM_RS05455 | - | 1139997..1140299 (+) | 303 | WP_225529681.1 | phage tail assembly protein T | - |
| ACMXKM_RS05460 | - | 1140286..1142439 (+) | 2154 | WP_075269215.1 | phage tail length tape measure family protein | - |
| ACMXKM_RS05465 | - | 1142436..1142786 (+) | 351 | WP_005719622.1 | phage tail protein | - |
| ACMXKM_RS05470 | - | 1142874..1143587 (+) | 714 | WP_319047058.1 | phage minor tail protein L | - |
| ACMXKM_RS05475 | - | 1143592..1144335 (+) | 744 | WP_016569980.1 | C40 family peptidase | - |
| ACMXKM_RS05480 | - | 1144278..1144898 (+) | 621 | WP_014667799.1 | tail assembly protein | - |
| ACMXKM_RS05485 | - | 1144902..1150796 (+) | 5895 | WP_415759970.1 | phage tail protein | - |
| ACMXKM_RS05490 | - | 1150844..1151167 (+) | 324 | WP_139616918.1 | hypothetical protein | - |
| ACMXKM_RS05495 | - | 1151593..1152429 (+) | 837 | WP_014390712.1 | KilA-N domain-containing protein | - |
| ACMXKM_RS05500 | - | 1152732..1153418 (+) | 687 | WP_250021904.1 | KilA-N domain-containing protein | - |
| ACMXKM_RS05505 | folE | 1153765..1154421 (+) | 657 | WP_005726594.1 | GTP cyclohydrolase I FolE | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 17175.98 Da Isoelectric Point: 6.9823
>NTDB_id=1095934 ACMXKM_RS05240 WP_415759795.1 1114527..1114991(-) (ssb) [Pasteurella multocida strain 200011]
MAGVNKAIIVGNLGNDPEIRTMPNGDPVAKISVATSESWIDKNTGERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQAQANAQANAQAPQNNAYANAKAGKPVQQADSFEDDSIPF
MAGVNKAIIVGNLGNDPEIRTMPNGDPVAKISVATSESWIDKNTGERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQAQANAQANAQAPQNNAYANAKAGKPVQQADSFEDDSIPF
Nucleotide
Download Length: 465 bp
>NTDB_id=1095934 ACMXKM_RS05240 WP_415759795.1 1114527..1114991(-) (ssb) [Pasteurella multocida strain 200011]
ATGGCTGGAGTCAATAAAGCAATTATCGTGGGGAATTTGGGAAACGATCCTGAAATCCGCACAATGCCAAATGGCGACCC
TGTTGCAAAAATCAGCGTCGCAACCAGTGAAAGCTGGATCGACAAAAATACTGGCGAACGAAAAACACAAACTGAATGGC
ATTCTATCGTGTTCTATCGTCGCCAAGCAGAAATTTGCGGTCAGTATCTCAAAAAAGGATCGAAAGTGTATGTGGAAGGG
CGTTTAAGAACTCGTAAATGGCAAGACCAAAACGGGCAAGATCGCTACACCACTGAAATCCAAGGCGACGTATTGCAGAT
GTTAGATAGTCGCCAAGATTCACAAGCACAAGCTAACGCACAAGCTAACGCACAAGCACCGCAAAACAACGCTTATGCGA
ATGCGAAAGCTGGAAAGCCAGTGCAACAGGCTGATAGTTTTGAAGATGATAGCATACCTTTTTAG
ATGGCTGGAGTCAATAAAGCAATTATCGTGGGGAATTTGGGAAACGATCCTGAAATCCGCACAATGCCAAATGGCGACCC
TGTTGCAAAAATCAGCGTCGCAACCAGTGAAAGCTGGATCGACAAAAATACTGGCGAACGAAAAACACAAACTGAATGGC
ATTCTATCGTGTTCTATCGTCGCCAAGCAGAAATTTGCGGTCAGTATCTCAAAAAAGGATCGAAAGTGTATGTGGAAGGG
CGTTTAAGAACTCGTAAATGGCAAGACCAAAACGGGCAAGATCGCTACACCACTGAAATCCAAGGCGACGTATTGCAGAT
GTTAGATAGTCGCCAAGATTCACAAGCACAAGCTAACGCACAAGCTAACGCACAAGCACCGCAAAACAACGCTTATGCGA
ATGCGAAAGCTGGAAAGCCAGTGCAACAGGCTGATAGTTTTGAAGATGATAGCATACCTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
61.878 |
100 |
0.727 |
| ssb | Vibrio cholerae strain A1552 |
47.701 |
100 |
0.539 |
| ssb | Neisseria meningitidis MC58 |
42.197 |
100 |
0.474 |
| ssb | Neisseria gonorrhoeae MS11 |
42.197 |
100 |
0.474 |