Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNAMG_RS09140 Genome accession   NZ_CP180440
Coordinates   1878714..1879187 (-) Length   157 a.a.
NCBI ID   WP_003774356.1    Uniprot ID   A0AAU9VGH2
Organism   Erysipelothrix rhusiopathiae strain 1023     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1870180..1879187 1878714..1879187 within 0


Gene organization within MGE regions


Location: 1870180..1879187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNAMG_RS09100 - 1870180..1870908 (-) 729 WP_013853428.1 MBL fold metallo-hydrolase -
  ACNAMG_RS09105 - 1870925..1872460 (-) 1536 WP_123245358.1 M23 family metallopeptidase -
  ACNAMG_RS09110 - 1872528..1874036 (-) 1509 WP_115355123.1 M23 family metallopeptidase -
  ACNAMG_RS09115 dnaB 1874038..1875408 (-) 1371 WP_003774361.1 replicative DNA helicase -
  ACNAMG_RS09120 rplI 1875420..1875866 (-) 447 WP_238000062.1 50S ribosomal protein L9 -
  ACNAMG_RS09125 - 1875868..1877823 (-) 1956 WP_238000061.1 DHH family phosphoesterase -
  ACNAMG_RS09130 - 1877870..1878409 (-) 540 WP_238000060.1 DUF2232 domain-containing protein -
  ACNAMG_RS09135 rpsR 1878463..1878696 (-) 234 WP_003774357.1 30S ribosomal protein S18 -
  ACNAMG_RS09140 ssb 1878714..1879187 (-) 474 WP_003774356.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17584.36 Da        Isoelectric Point: 4.4023

>NTDB_id=1095922 ACNAMG_RS09140 WP_003774356.1 1878714..1879187(-) (ssb) [Erysipelothrix rhusiopathiae strain 1023]
MINRTILVGRLTRDPELRKTQTGKSVVSFTVACNRRFGQQDETDFINCVAWNQTADFMANYLLKGALVGLEGRIQSRSYE
DATGKRVYVQEVVVDTLQSLESRAQRQEQGASQGQYQNQNSNQGGSSYTPSYQADPEPSFSMDDEPVLDITSDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1095922 ACNAMG_RS09140 WP_003774356.1 1878714..1879187(-) (ssb) [Erysipelothrix rhusiopathiae strain 1023]
ATGATTAATCGCACTATATTAGTGGGTCGTTTAACTCGAGATCCAGAACTTCGTAAAACACAAACTGGTAAATCAGTCGT
TTCGTTTACTGTAGCGTGCAACCGCCGCTTTGGACAACAAGATGAAACTGATTTTATCAATTGTGTGGCTTGGAATCAAA
CAGCTGATTTTATGGCAAATTACTTACTAAAGGGTGCTTTAGTAGGTCTAGAAGGTCGAATTCAATCGAGATCATATGAA
GACGCTACCGGTAAACGTGTATATGTTCAAGAGGTTGTTGTGGATACACTTCAATCACTCGAATCACGCGCACAACGTCA
AGAACAAGGCGCAAGCCAAGGTCAATATCAGAATCAAAACAGTAATCAAGGTGGATCAAGTTATACACCTTCATACCAAG
CTGATCCTGAACCATCATTCTCAATGGATGATGAGCCCGTTCTCGATATAACCAGTGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

45.882

100

0.497
  ssbA Bacillus subtilis subsp. subtilis str. 168

41.989

100

0.484
  ssb Neisseria meningitidis MC58

36.994

100

0.408
  ssb Neisseria gonorrhoeae MS11

33.526

100

0.369

Multiple sequence alignment