Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACMX8W_RS22110 Genome accession   NZ_CP180439
Coordinates   4230282..4230800 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain Z-294     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4225282..4235800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMX8W_RS22080 (ACMX8W_22080) yyaJ 4225787..4227142 (+) 1356 WP_015483979.1 MFS transporter -
  ACMX8W_RS22085 (ACMX8W_22085) maa 4227176..4227730 (-) 555 WP_047183517.1 sugar O-acetyltransferase -
  ACMX8W_RS22090 (ACMX8W_22090) yyaH 4227746..4228126 (-) 381 WP_015483980.1 VOC family protein -
  ACMX8W_RS22095 (ACMX8W_22095) ccpB 4228182..4229117 (-) 936 WP_047183518.1 transcriptional regulator CcpB -
  ACMX8W_RS22100 (ACMX8W_22100) xth 4229176..4229934 (-) 759 WP_047183519.1 exodeoxyribonuclease III -
  ACMX8W_RS22105 (ACMX8W_22105) rpsR 4229999..4230238 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  ACMX8W_RS22110 (ACMX8W_22110) ssbA 4230282..4230800 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  ACMX8W_RS22115 (ACMX8W_22115) rpsF 4230841..4231128 (-) 288 WP_003236622.1 30S ribosomal protein S6 -
  ACMX8W_RS22120 (ACMX8W_22120) ychF 4231239..4232339 (-) 1101 WP_015483981.1 redox-regulated ATPase YchF -
  ACMX8W_RS22125 (ACMX8W_22125) yyaE 4232466..4234469 (-) 2004 WP_047183520.1 molybdopterin-dependent oxidoreductase -
  ACMX8W_RS22130 (ACMX8W_22130) yyzM 4234520..4234726 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1095916 ACMX8W_RS22110 WP_003219228.1 4230282..4230800(-) (ssbA) [Bacillus subtilis strain Z-294]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1095916 ACMX8W_RS22110 WP_003219228.1 4230282..4230800(-) (ssbA) [Bacillus subtilis strain Z-294]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment