Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACMYNJ_RS05390 Genome accession   NZ_CP180391
Coordinates   1263161..1264219 (-) Length   352 a.a.
NCBI ID   WP_011348458.1    Uniprot ID   -
Organism   Xanthomonas euvesicatoria pv. polysciadis strain Pgu1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1258161..1269219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMYNJ_RS05365 - 1258428..1259204 (-) 777 WP_416203948.1 hypothetical protein -
  ACMYNJ_RS05370 - 1259266..1261167 (-) 1902 WP_005911884.1 type IV pilus secretin PilQ -
  ACMYNJ_RS05375 - 1261187..1261720 (-) 534 WP_007974439.1 pilus assembly protein PilP -
  ACMYNJ_RS05380 - 1261717..1262382 (-) 666 WP_008575845.1 type 4a pilus biogenesis protein PilO -
  ACMYNJ_RS05385 - 1262379..1263161 (-) 783 WP_011348457.1 PilN domain-containing protein -
  ACMYNJ_RS05390 comM 1263161..1264219 (-) 1059 WP_011348458.1 pilus assembly protein PilM Machinery gene
  ACMYNJ_RS05395 - 1264337..1266859 (+) 2523 WP_184421198.1 PBP1A family penicillin-binding protein -
  ACMYNJ_RS05405 - 1268114..1269010 (+) 897 WP_416203950.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37606.21 Da        Isoelectric Point: 4.3924

>NTDB_id=1095632 ACMYNJ_RS05390 WP_011348458.1 1263161..1264219(-) (comM) [Xanthomonas euvesicatoria pv. polysciadis strain Pgu1]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1095632 ACMYNJ_RS05390 WP_011348458.1 1263161..1264219(-) (comM) [Xanthomonas euvesicatoria pv. polysciadis strain Pgu1]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGCGGTGGAACCATTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCCGCTGCT
GTCGCCGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACCTGGAAGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTCAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAACA
GCCCGGACATGGTGCAGGTGCTGCTGGCCGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGC
GGTTTGACCGCCAAGGTCATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTCGCCAGCGAATTGCCGGT
GGCCGCTGACGCAGTCGTTGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGCTCCGGTCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACCGACGAAGTGATGCGCCGTTACGGGCTGACCTATGAGGAG
GCTGGCCTTGCCAAGCGTCAGGGTGGCCTGCCGGAAAGTTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGTCTGCTGCAGTTCTTCTATGCGGGAAGTGAGTTCAACCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGCGTGACCACGGTCGTTGCAAATCCGCTTGCC
CAGATGACGCTTGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment