Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMUJI_RS12100 Genome accession   NZ_CP180349
Coordinates   2490493..2491020 (+) Length   175 a.a.
NCBI ID   WP_416830835.1    Uniprot ID   -
Organism   MAG: Erythrobacter sp. isolate tig00000075     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2485493..2496020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMUJI_RS12065 (ACMUJI_12065) - 2485954..2486433 (-) 480 WP_416830830.1 hypothetical protein -
  ACMUJI_RS12070 (ACMUJI_12070) - 2486482..2487060 (-) 579 WP_034951950.1 DUF4402 domain-containing protein -
  ACMUJI_RS12075 (ACMUJI_12075) - 2487129..2487851 (-) 723 WP_416830831.1 M48 family metallopeptidase -
  ACMUJI_RS12080 (ACMUJI_12080) - 2487848..2488336 (-) 489 WP_416830832.1 YcgN family cysteine cluster protein -
  ACMUJI_RS12085 (ACMUJI_12085) - 2488324..2488959 (-) 636 WP_416830833.1 SCO family protein -
  ACMUJI_RS12090 (ACMUJI_12090) - 2489049..2489699 (+) 651 WP_338304159.1 ankyrin repeat domain-containing protein -
  ACMUJI_RS12095 (ACMUJI_12095) - 2489701..2490387 (+) 687 WP_416830834.1 COQ9 family protein -
  ACMUJI_RS12100 (ACMUJI_12100) ssb 2490493..2491020 (+) 528 WP_416830835.1 single-stranded DNA-binding protein Machinery gene
  ACMUJI_RS12105 (ACMUJI_12105) - 2491058..2491939 (-) 882 WP_416830836.1 energy transducer TonB -
  ACMUJI_RS12110 (ACMUJI_12110) - 2492035..2492574 (-) 540 WP_416830837.1 YceD family protein -
  ACMUJI_RS12115 (ACMUJI_12115) - 2492571..2493098 (-) 528 WP_416830839.1 ubiquinol-cytochrome C chaperone family protein -
  ACMUJI_RS12120 (ACMUJI_12120) - 2493360..2493854 (+) 495 WP_051699501.1 outer membrane protein assembly factor BamE -
  ACMUJI_RS12125 (ACMUJI_12125) hslV 2493909..2494469 (+) 561 WP_416830840.1 ATP-dependent protease subunit HslV -
  ACMUJI_RS12130 (ACMUJI_12130) hslU 2494487..2495788 (+) 1302 WP_034951972.1 ATP-dependent protease ATPase subunit HslU -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 17782.36 Da        Isoelectric Point: 5.2437

>NTDB_id=1095409 ACMUJI_RS12100 WP_416830835.1 2490493..2491020(+) (ssb) [MAG: Erythrobacter sp. isolate tig00000075]
MAGSLNKVMLIGNLGADPEVRTFQNGGKVCNLRVATTETWKDRNSGERQERTEWHTVAIFNEGLAGVAERYLKKGSKVYI
EGQLQTRKWQDQNGNDRYSTEVVLRGPNSVMTMLDSAGGGGGGMGGGGGRSGGGYGGGGGGAGGAGGGSGGGWNQGGGSG
SSGGGYDDLDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1095409 ACMUJI_RS12100 WP_416830835.1 2490493..2491020(+) (ssb) [MAG: Erythrobacter sp. isolate tig00000075]
ATGGCGGGTTCGCTCAACAAGGTCATGCTGATCGGCAATCTCGGGGCGGACCCCGAAGTGCGCACGTTTCAGAACGGTGG
CAAGGTCTGCAACCTGCGCGTCGCCACGACCGAGACGTGGAAAGACCGCAACTCGGGTGAGCGGCAGGAACGCACCGAAT
GGCATACCGTCGCGATCTTCAACGAAGGTCTGGCAGGCGTTGCCGAACGCTATCTGAAGAAAGGCAGCAAGGTCTATATC
GAAGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGAACGGCAATGACCGGTATTCGACCGAAGTCGTGCTGCGCGGCCC
CAACTCGGTGATGACCATGCTCGACAGCGCCGGAGGCGGCGGTGGCGGCATGGGTGGCGGCGGTGGCCGTTCGGGTGGCG
GCTACGGCGGCGGCGGCGGTGGTGCCGGCGGCGCTGGCGGCGGTTCGGGCGGTGGCTGGAACCAGGGCGGCGGAAGCGGC
AGCTCGGGCGGCGGCTACGACGATCTGGACGACGATATCCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.714

100

0.497
  ssb Glaesserella parasuis strain SC1401

43.216

100

0.491
  ssb Neisseria gonorrhoeae MS11

40.223

100

0.411
  ssb Neisseria meningitidis MC58

40.223

100

0.411

Multiple sequence alignment