Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMUJJ_RS01620 Genome accession   NZ_CP180348
Coordinates   336790..337305 (-) Length   171 a.a.
NCBI ID   WP_416915715.1    Uniprot ID   -
Organism   MAG: Roseicyclus sp. isolate     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 331790..342305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMUJJ_RS01600 (ACMUJJ_01600) trpE 331981..333492 (-) 1512 WP_416915712.1 anthranilate synthase component I -
  ACMUJJ_RS01605 (ACMUJJ_01605) - 333492..334937 (-) 1446 WP_416915713.1 peptidyl-prolyl cis-trans isomerase -
  ACMUJJ_RS01610 (ACMUJJ_01610) - 334957..335346 (-) 390 WP_416915714.1 SurA N-terminal domain-containing protein -
  ACMUJJ_RS01615 (ACMUJJ_01615) - 335465..336657 (-) 1193 Protein_315 aminotransferase -
  ACMUJJ_RS01620 (ACMUJJ_01620) ssb 336790..337305 (-) 516 WP_416915715.1 single-stranded DNA-binding protein Machinery gene
  ACMUJJ_RS01625 (ACMUJJ_01625) - 337473..338066 (+) 594 WP_416915716.1 lytic transglycosylase domain-containing protein -
  ACMUJJ_RS01630 (ACMUJJ_01630) - 338058..338654 (-) 597 WP_416915717.1 RNA polymerase sigma factor -
  ACMUJJ_RS01635 (ACMUJJ_01635) - 338964..339236 (+) 273 WP_416915718.1 hypothetical protein -
  ACMUJJ_RS01640 (ACMUJJ_01640) ilvN 339333..339893 (-) 561 WP_338275502.1 acetolactate synthase small subunit -
  ACMUJJ_RS01645 (ACMUJJ_01645) - 339967..341655 (-) 1689 WP_338275504.1 BCCT family transporter -
  ACMUJJ_RS01650 (ACMUJJ_01650) - 341696..342109 (-) 414 WP_416915719.1 universal stress protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18074.67 Da        Isoelectric Point: 5.0648

>NTDB_id=1095400 ACMUJJ_RS01620 WP_416915715.1 336790..337305(-) (ssb) [MAG: Roseicyclus sp. isolate]
MAGSVNKVILIGNLGRDPEVRSFPNGGKVCNLRIATSENWKDRNTGERREKTEWHSVAIFSEPLARIAEQYLRKGSKVYI
EGQLETRKWQDQSGQDRYSTEVVLRPYRGELTLLDGRDGGGSGGGGGGGYGGGASGGYGDDRGGGYPDDRGGPSGGGGYG
GGGDVDDEIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1095400 ACMUJJ_RS01620 WP_416915715.1 336790..337305(-) (ssb) [MAG: Roseicyclus sp. isolate]
ATGGCCGGATCCGTCAACAAGGTGATCCTGATCGGAAACCTGGGCCGCGACCCCGAGGTGCGCAGCTTTCCCAATGGCGG
CAAGGTCTGCAACCTGCGCATCGCCACCTCGGAGAACTGGAAGGACCGCAACACCGGCGAGCGGCGCGAAAAGACCGAAT
GGCATTCGGTCGCGATCTTTTCCGAACCGCTGGCGCGGATCGCCGAGCAATACCTGCGCAAAGGGTCCAAGGTCTATATC
GAGGGGCAGCTCGAAACCCGCAAATGGCAAGACCAGTCGGGGCAGGACCGCTATTCGACGGAAGTGGTGCTGCGGCCCTA
TCGGGGCGAGCTGACGCTTCTGGACGGGCGTGACGGCGGCGGCAGCGGTGGTGGCGGCGGCGGCGGGTATGGCGGCGGTG
CCTCGGGCGGCTATGGCGACGACCGCGGCGGCGGCTATCCCGACGACAGGGGCGGCCCGAGCGGTGGCGGCGGCTATGGC
GGCGGCGGGGATGTGGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.023

100

0.526
  ssb Glaesserella parasuis strain SC1401

54

87.719

0.474
  ssb Neisseria gonorrhoeae MS11

41.341

100

0.433
  ssb Neisseria meningitidis MC58

40.782

100

0.427

Multiple sequence alignment