Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMVO5_RS10985 Genome accession   NZ_CP180346
Coordinates   2280045..2280542 (+) Length   165 a.a.
NCBI ID   WP_416907547.1    Uniprot ID   -
Organism   MAG: Polymorphobacter sp. isolate     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2275045..2285542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVO5_RS10950 (ACMVO5_10950) - 2275576..2276064 (-) 489 WP_416907541.1 outer membrane protein assembly factor BamE -
  ACMVO5_RS10955 (ACMVO5_10955) - 2276187..2276723 (+) 537 WP_416907542.1 ubiquinol-cytochrome C chaperone family protein -
  ACMVO5_RS10960 (ACMVO5_10960) - 2276720..2277220 (+) 501 WP_416907543.1 YceD family protein -
  ACMVO5_RS10965 (ACMVO5_10965) - 2277217..2277573 (+) 357 WP_416907544.1 tRNA-binding protein -
  ACMVO5_RS10970 (ACMVO5_10970) - 2277570..2278487 (-) 918 WP_416907545.1 SMP-30/gluconolactonase/LRE family protein -
  ACMVO5_RS10975 (ACMVO5_10975) - 2278634..2279764 (+) 1131 WP_416909362.1 DNA recombination protein RmuC -
  ACMVO5_RS10980 (ACMVO5_10980) - 2279754..2279984 (+) 231 WP_416907546.1 hypothetical protein -
  ACMVO5_RS10985 (ACMVO5_10985) ssb 2280045..2280542 (+) 498 WP_416907547.1 single-stranded DNA-binding protein Machinery gene
  ACMVO5_RS10990 (ACMVO5_10990) - 2280539..2281126 (-) 588 WP_416907548.1 urate hydroxylase PuuD -
  ACMVO5_RS10995 (ACMVO5_10995) folE 2281188..2281802 (-) 615 WP_416909363.1 GTP cyclohydrolase I FolE -
  ACMVO5_RS11000 (ACMVO5_11000) - 2281958..2282539 (-) 582 WP_416907549.1 PEPxxWA-CTERM sorting domain-containing protein -
  ACMVO5_RS11005 (ACMVO5_11005) typA 2282704..2284552 (-) 1849 Protein_2163 translational GTPase TypA -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17575.31 Da        Isoelectric Point: 5.3027

>NTDB_id=1095398 ACMVO5_RS10985 WP_416907547.1 2280045..2280542(+) (ssb) [MAG: Polymorphobacter sp. isolate]
MAGVNKVILVGNLGKDPEQRSFANGGSVVRFTVATSETWRDKQSGERREKTEWHNVSIFNENLGKIATQFLRKGSKVYLE
GSLETRKWQDQQGQDRYTTEVVLKPFRGELTLLDSAGGGAGGGAMGGGRDTADYGGGYGSAPASGGASGGRPPAFDDDLN
DDVPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1095398 ACMVO5_RS10985 WP_416907547.1 2280045..2280542(+) (ssb) [MAG: Polymorphobacter sp. isolate]
ATGGCAGGGGTAAACAAGGTCATTCTGGTAGGCAATCTGGGCAAGGACCCGGAGCAGCGCAGCTTTGCCAATGGCGGCTC
GGTGGTGCGCTTCACGGTGGCGACGTCGGAGACGTGGCGCGACAAGCAGAGCGGCGAGCGGCGCGAGAAGACCGAGTGGC
ACAATGTGTCGATCTTCAACGAGAATCTGGGGAAGATCGCCACCCAGTTTCTGCGCAAGGGCTCGAAGGTCTATCTGGAA
GGGAGCCTGGAGACGCGCAAGTGGCAGGACCAGCAGGGGCAGGACCGGTATACGACCGAAGTGGTGCTGAAGCCGTTTCG
CGGCGAGCTGACGCTGCTGGACAGCGCGGGTGGCGGCGCTGGCGGCGGCGCGATGGGTGGTGGTCGCGACACCGCGGATT
ATGGCGGCGGCTATGGCTCTGCGCCGGCATCAGGCGGGGCGTCGGGGGGGCGGCCGCCGGCGTTTGACGACGACCTCAAC
GATGATGTGCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.468

100

0.564
  ssb Vibrio cholerae strain A1552

48.045

100

0.521
  ssb Neisseria gonorrhoeae MS11

37.433

100

0.424
  ssb Neisseria meningitidis MC58

38.202

100

0.412

Multiple sequence alignment