Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACMVYQ_RS00580 Genome accession   NZ_CP180345
Coordinates   74509..75018 (-) Length   169 a.a.
NCBI ID   WP_002434425.1    Uniprot ID   -
Organism   Staphylococcus capitis strain YSMAA1_1_H3st     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 69509..80018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVYQ_RS00535 (ACMVYQ_00535) - 70452..70706 (-) 255 WP_002434433.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  ACMVYQ_RS00540 (ACMVYQ_00540) - 71009..71290 (+) 282 WP_002454427.1 hypothetical protein -
  ACMVYQ_RS00545 (ACMVYQ_00545) - 71272..72018 (-) 747 WP_137745028.1 amidohydrolase family protein -
  ACMVYQ_RS00550 (ACMVYQ_00550) - 72175..72432 (+) 258 WP_002434565.1 helix-turn-helix domain-containing protein -
  ACMVYQ_RS00555 (ACMVYQ_00555) - 72503..72856 (-) 354 WP_002454425.1 membrane protein -
  ACMVYQ_RS00560 (ACMVYQ_00560) - 72940..73170 (-) 231 WP_002454424.1 hypothetical protein -
  ACMVYQ_RS00565 (ACMVYQ_00565) - 73173..73502 (-) 330 WP_229716971.1 hypothetical protein -
  ACMVYQ_RS00570 (ACMVYQ_00570) - 73639..73893 (-) 255 WP_002454422.1 hypothetical protein -
  ACMVYQ_RS00575 (ACMVYQ_00575) rpsR 74220..74462 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  ACMVYQ_RS00580 (ACMVYQ_00580) ssbA 74509..75018 (-) 510 WP_002434425.1 single-stranded DNA-binding protein Machinery gene
  ACMVYQ_RS00585 (ACMVYQ_00585) rpsF 75040..75336 (-) 297 WP_002434058.1 30S ribosomal protein S6 -
  ACMVYQ_RS00590 (ACMVYQ_00590) - 75469..75633 (-) 165 Protein_75 recombinase family protein -
  ACMVYQ_RS00595 (ACMVYQ_00595) - 75749..76495 (-) 747 WP_002454420.1 HAD family hydrolase -
  ACMVYQ_RS00600 (ACMVYQ_00600) - 76499..76915 (-) 417 WP_249339595.1 NUDIX domain-containing protein -
  ACMVYQ_RS00605 (ACMVYQ_00605) - 76912..77802 (-) 891 WP_002454418.1 DMT family transporter -
  ACMVYQ_RS00610 (ACMVYQ_00610) - 77828..78193 (-) 366 WP_002454417.1 NUDIX hydrolase -
  ACMVYQ_RS00615 (ACMVYQ_00615) - 78206..78883 (-) 678 WP_137745030.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18688.18 Da        Isoelectric Point: 4.5778

>NTDB_id=1095358 ACMVYQ_RS00580 WP_002434425.1 74509..75018(-) (ssbA) [Staphylococcus capitis strain YSMAA1_1_H3st]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQQGGQRSQNNDFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1095358 ACMVYQ_RS00580 WP_002434425.1 74509..75018(-) (ssbA) [Staphylococcus capitis strain YSMAA1_1_H3st]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTCATTAACTGTGTTGTCT
TTAGAAGACAAGCTGAAAATGTTAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCGCGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAACAAGGTGGCCAACGTTCACAAAACAACGATTTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAATACGTCTTACAATAACAATAATTCATCAAACTCTAATCAATCAGACAACCCATTTGCAAATGCTAATGGCCCAATC
GATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.483

100

0.669
  ssb Latilactobacillus sakei subsp. sakei 23K

55.172

100

0.568
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

66.272

0.379
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.361

Multiple sequence alignment