Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACM66F_RS04315 Genome accession   NZ_CP180318
Coordinates   869820..870293 (-) Length   157 a.a.
NCBI ID   WP_003774356.1    Uniprot ID   A0AAU9VGH2
Organism   Erysipelothrix rhusiopathiae strain 1012     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 864820..875293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM66F_RS04290 dnaB 865144..866514 (-) 1371 WP_003774361.1 replicative DNA helicase -
  ACM66F_RS04295 rplI 866526..866972 (-) 447 WP_238000062.1 50S ribosomal protein L9 -
  ACM66F_RS04300 - 866974..868929 (-) 1956 WP_238000061.1 DHH family phosphoesterase -
  ACM66F_RS04305 - 868976..869515 (-) 540 WP_238000060.1 DUF2232 domain-containing protein -
  ACM66F_RS04310 rpsR 869569..869802 (-) 234 WP_003774357.1 30S ribosomal protein S18 -
  ACM66F_RS04315 ssb 869820..870293 (-) 474 WP_003774356.1 single-stranded DNA-binding protein Machinery gene
  ACM66F_RS04320 rpsF 870319..870609 (-) 291 WP_003774354.1 30S ribosomal protein S6 -
  ACM66F_RS04325 - 870749..871387 (-) 639 WP_003774352.1 IspD/TarI family cytidylyltransferase -
  ACM66F_RS04330 - 871449..872300 (-) 852 WP_115355127.1 LysR family transcriptional regulator -
  ACM66F_RS04335 - 872394..872957 (+) 564 WP_115355128.1 chromate transporter -
  ACM66F_RS04340 - 872941..873480 (+) 540 WP_238000059.1 chromate transporter -
  ACM66F_RS04345 lysS 873518..875002 (-) 1485 WP_003774347.1 lysine--tRNA ligase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17584.36 Da        Isoelectric Point: 4.4023

>NTDB_id=1095258 ACM66F_RS04315 WP_003774356.1 869820..870293(-) (ssb) [Erysipelothrix rhusiopathiae strain 1012]
MINRTILVGRLTRDPELRKTQTGKSVVSFTVACNRRFGQQDETDFINCVAWNQTADFMANYLLKGALVGLEGRIQSRSYE
DATGKRVYVQEVVVDTLQSLESRAQRQEQGASQGQYQNQNSNQGGSSYTPSYQADPEPSFSMDDEPVLDITSDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1095258 ACM66F_RS04315 WP_003774356.1 869820..870293(-) (ssb) [Erysipelothrix rhusiopathiae strain 1012]
ATGATTAATCGCACTATATTAGTGGGTCGTTTAACTCGAGATCCAGAACTTCGTAAAACACAAACTGGTAAATCAGTCGT
TTCGTTTACTGTAGCGTGCAACCGCCGCTTTGGACAACAAGATGAAACTGATTTTATCAATTGTGTGGCTTGGAATCAAA
CAGCTGATTTTATGGCAAATTACTTACTAAAGGGTGCTTTAGTAGGTCTAGAAGGTCGAATTCAATCGAGATCATATGAA
GACGCTACCGGTAAACGTGTATATGTTCAAGAGGTTGTTGTGGATACACTTCAATCACTCGAATCACGCGCACAACGTCA
AGAACAAGGCGCAAGCCAAGGTCAATATCAGAATCAAAACAGTAATCAAGGTGGATCAAGTTATACACCTTCATACCAAG
CTGATCCTGAACCATCATTCTCAATGGATGATGAGCCCGTTCTCGATATAACCAGTGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

45.882

100

0.497
  ssbA Bacillus subtilis subsp. subtilis str. 168

41.989

100

0.484
  ssb Neisseria meningitidis MC58

36.994

100

0.408
  ssb Neisseria gonorrhoeae MS11

33.526

100

0.369

Multiple sequence alignment