Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACMVYO_RS08155 Genome accession   NZ_CP180296
Coordinates   1633319..1633834 (+) Length   171 a.a.
NCBI ID   WP_048762494.1    Uniprot ID   -
Organism   Staphylococcus hominis strain YSMAS1_1_D4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1628319..1638834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVYO_RS08125 (ACMVYO_08125) - 1629327..1630151 (+) 825 WP_017175669.1 ParB/RepB/Spo0J family partition protein -
  ACMVYO_RS08130 (ACMVYO_08130) - 1630281..1631159 (+) 879 WP_017175670.1 mechanosensitive ion channel family protein -
  ACMVYO_RS08135 (ACMVYO_08135) - 1631180..1631383 (+) 204 WP_145428735.1 DUF951 domain-containing protein -
  ACMVYO_RS08140 (ACMVYO_08140) ychF 1631395..1632492 (+) 1098 WP_019834710.1 redox-regulated ATPase YchF -
  ACMVYO_RS08145 (ACMVYO_08145) - 1632562..1632753 (-) 192 WP_049335850.1 hypothetical protein -
  ACMVYO_RS08150 (ACMVYO_08150) rpsF 1633001..1633297 (+) 297 WP_017175673.1 30S ribosomal protein S6 -
  ACMVYO_RS08155 (ACMVYO_08155) ssbA 1633319..1633834 (+) 516 WP_048762494.1 single-stranded DNA-binding protein Machinery gene
  ACMVYO_RS08160 (ACMVYO_08160) rpsR 1633876..1634118 (+) 243 WP_002447994.1 30S ribosomal protein S18 -
  ACMVYO_RS08165 (ACMVYO_08165) - 1634301..1635245 (+) 945 WP_048762530.1 hypothetical protein -
  ACMVYO_RS08170 (ACMVYO_08170) - 1635304..1635561 (-) 258 WP_048762493.1 helix-turn-helix domain-containing protein -
  ACMVYO_RS08175 (ACMVYO_08175) - 1635881..1636129 (+) 249 WP_002447983.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  ACMVYO_RS08180 (ACMVYO_08180) - 1636407..1636985 (+) 579 WP_017175677.1 histidine phosphatase family protein -
  ACMVYO_RS08185 (ACMVYO_08185) - 1637082..1637711 (-) 630 WP_017175678.1 NDxxF motif lipoprotein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18818.30 Da        Isoelectric Point: 4.7306

>NTDB_id=1095131 ACMVYO_RS08155 WP_048762494.1 1633319..1633834(+) (ssbA) [Staphylococcus hominis strain YSMAS1_1_D4]
MINRVVLVGRLTKDPEYRSTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRNQGNNDFQDYGQGFGGSQSGQNTSYNNNNNRASNNNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1095131 ACMVYO_RS08155 WP_048762494.1 1633319..1633834(+) (ssbA) [Staphylococcus hominis strain YSMAS1_1_D4]
ATGATAAATCGAGTTGTATTAGTAGGTCGTTTAACTAAGGATCCAGAATACAGAAGTACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACGTTGTTGTAT
TTAGAAGACAAGCAGAAAACGTAAATAACTATCTTTCAAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGTATATTTGTCACTGAAGTTGTAGCGGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCACAAGGTGGACAACGTAATCAAGGAAATAATGATTTCCAAGATTATGGCCAAGGATTTGGTGGTTCACAATCAGGAC
AAAATACATCTTATAATAATAATAACAATCGTGCATCAAACAATAATCAATCAGATAACCCATTTGCAAATGCGAATGGT
CCAATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.889

100

0.673
  ssb Latilactobacillus sakei subsp. sakei 23K

54.913

100

0.556
  ssb Glaesserella parasuis strain SC1401

34.043

100

0.374
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

61.988

0.374

Multiple sequence alignment