Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ACLBKY_RS11425 Genome accession   NZ_CP180233
Coordinates   2230746..2231039 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain Ba 5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2225746..2236039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBKY_RS11375 (ACLBKY_11375) sinR 2225904..2226239 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  ACLBKY_RS11380 (ACLBKY_11380) tasA 2226307..2227107 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  ACLBKY_RS11385 (ACLBKY_11385) sipW 2227166..2227738 (-) 573 WP_017357979.1 signal peptidase I SipW -
  ACLBKY_RS11390 (ACLBKY_11390) tapA 2227788..2228315 (-) 528 WP_019743006.1 amyloid fiber anchoring/assembly protein TapA -
  ACLBKY_RS11395 (ACLBKY_11395) - 2228568..2228894 (+) 327 WP_048001387.1 DUF3889 domain-containing protein -
  ACLBKY_RS11400 (ACLBKY_11400) - 2228929..2229129 (-) 201 WP_060781188.1 YqzE family protein -
  ACLBKY_RS11405 (ACLBKY_11405) - 2229190..2229573 (-) 384 WP_057079315.1 competence type IV pilus minor pilin ComGG -
  ACLBKY_RS11410 (ACLBKY_11410) comGF 2229570..2230067 (-) 498 WP_342501107.1 competence type IV pilus minor pilin ComGF -
  ACLBKY_RS11415 (ACLBKY_11415) comGE 2230009..2230323 (-) 315 WP_057079313.1 competence type IV pilus minor pilin ComGE -
  ACLBKY_RS11420 (ACLBKY_11420) comGD 2230307..2230753 (-) 447 WP_342501108.1 competence type IV pilus minor pilin ComGD -
  ACLBKY_RS11425 (ACLBKY_11425) comGC 2230746..2231039 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  ACLBKY_RS11430 (ACLBKY_11430) comGB 2231056..2232096 (-) 1041 WP_414834848.1 competence type IV pilus assembly protein ComGB -
  ACLBKY_RS11435 (ACLBKY_11435) comGA 2232077..2233147 (-) 1071 WP_414834849.1 competence type IV pilus ATPase ComGA Machinery gene
  ACLBKY_RS11440 (ACLBKY_11440) - 2233605..2234474 (-) 870 WP_007501231.1 STAS domain-containing protein -
  ACLBKY_RS11450 (ACLBKY_11450) - 2234700..2235080 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  ACLBKY_RS11455 (ACLBKY_11455) - 2235293..2235535 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=1094745 ACLBKY_RS11425 WP_008342186.1 2230746..2231039(-) (comGC) [Bacillus altitudinis strain Ba 5]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1094745 ACLBKY_RS11425 WP_008342186.1 2230746..2231039(-) (comGC) [Bacillus altitudinis strain Ba 5]
ATGAATGATAAAGGATTTACCCTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATTACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGATGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAGGGATTAACT
TGTCCGAATGGAAAGGCAATTTTCATTCAAAATGGGGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment