Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACLBKY_RS11375 Genome accession   NZ_CP180233
Coordinates   2225904..2226239 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain Ba 5     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2220904..2231239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBKY_RS11355 (ACLBKY_11355) gcvT 2221380..2222477 (-) 1098 WP_414834846.1 glycine cleavage system aminomethyltransferase GcvT -
  ACLBKY_RS11360 (ACLBKY_11360) - 2223039..2224709 (+) 1671 WP_414834847.1 DEAD/DEAH box helicase -
  ACLBKY_RS11365 (ACLBKY_11365) - 2224724..2225521 (+) 798 WP_268355892.1 YqhG family protein -
  ACLBKY_RS11370 (ACLBKY_11370) - 2225706..2225870 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  ACLBKY_RS11375 (ACLBKY_11375) sinR 2225904..2226239 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  ACLBKY_RS11380 (ACLBKY_11380) tasA 2226307..2227107 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  ACLBKY_RS11385 (ACLBKY_11385) sipW 2227166..2227738 (-) 573 WP_017357979.1 signal peptidase I SipW -
  ACLBKY_RS11390 (ACLBKY_11390) tapA 2227788..2228315 (-) 528 WP_019743006.1 amyloid fiber anchoring/assembly protein TapA -
  ACLBKY_RS11395 (ACLBKY_11395) - 2228568..2228894 (+) 327 WP_048001387.1 DUF3889 domain-containing protein -
  ACLBKY_RS11400 (ACLBKY_11400) - 2228929..2229129 (-) 201 WP_060781188.1 YqzE family protein -
  ACLBKY_RS11405 (ACLBKY_11405) - 2229190..2229573 (-) 384 WP_057079315.1 competence type IV pilus minor pilin ComGG -
  ACLBKY_RS11410 (ACLBKY_11410) comGF 2229570..2230067 (-) 498 WP_342501107.1 competence type IV pilus minor pilin ComGF -
  ACLBKY_RS11415 (ACLBKY_11415) comGE 2230009..2230323 (-) 315 WP_057079313.1 competence type IV pilus minor pilin ComGE -
  ACLBKY_RS11420 (ACLBKY_11420) comGD 2230307..2230753 (-) 447 WP_342501108.1 competence type IV pilus minor pilin ComGD -
  ACLBKY_RS11425 (ACLBKY_11425) comGC 2230746..2231039 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=1094744 ACLBKY_RS11375 WP_017357978.1 2225904..2226239(+) (sinR) [Bacillus altitudinis strain Ba 5]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1094744 ACLBKY_RS11375 WP_017357978.1 2225904..2226239(+) (sinR) [Bacillus altitudinis strain Ba 5]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928

Multiple sequence alignment