Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   ACLBKY_RS11435 Genome accession   NZ_CP180233
Coordinates   2232077..2233147 (-) Length   356 a.a.
NCBI ID   WP_414834849.1    Uniprot ID   -
Organism   Bacillus altitudinis strain Ba 5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2227077..2238147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBKY_RS11385 (ACLBKY_11385) sipW 2227166..2227738 (-) 573 WP_017357979.1 signal peptidase I SipW -
  ACLBKY_RS11390 (ACLBKY_11390) tapA 2227788..2228315 (-) 528 WP_019743006.1 amyloid fiber anchoring/assembly protein TapA -
  ACLBKY_RS11395 (ACLBKY_11395) - 2228568..2228894 (+) 327 WP_048001387.1 DUF3889 domain-containing protein -
  ACLBKY_RS11400 (ACLBKY_11400) - 2228929..2229129 (-) 201 WP_060781188.1 YqzE family protein -
  ACLBKY_RS11405 (ACLBKY_11405) - 2229190..2229573 (-) 384 WP_057079315.1 competence type IV pilus minor pilin ComGG -
  ACLBKY_RS11410 (ACLBKY_11410) comGF 2229570..2230067 (-) 498 WP_342501107.1 competence type IV pilus minor pilin ComGF -
  ACLBKY_RS11415 (ACLBKY_11415) comGE 2230009..2230323 (-) 315 WP_057079313.1 competence type IV pilus minor pilin ComGE -
  ACLBKY_RS11420 (ACLBKY_11420) comGD 2230307..2230753 (-) 447 WP_342501108.1 competence type IV pilus minor pilin ComGD -
  ACLBKY_RS11425 (ACLBKY_11425) comGC 2230746..2231039 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  ACLBKY_RS11430 (ACLBKY_11430) comGB 2231056..2232096 (-) 1041 WP_414834848.1 competence type IV pilus assembly protein ComGB -
  ACLBKY_RS11435 (ACLBKY_11435) comGA 2232077..2233147 (-) 1071 WP_414834849.1 competence type IV pilus ATPase ComGA Machinery gene
  ACLBKY_RS11440 (ACLBKY_11440) - 2233605..2234474 (-) 870 WP_007501231.1 STAS domain-containing protein -
  ACLBKY_RS11450 (ACLBKY_11450) - 2234700..2235080 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  ACLBKY_RS11455 (ACLBKY_11455) - 2235293..2235535 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  ACLBKY_RS11460 (ACLBKY_11460) - 2235584..2236222 (-) 639 WP_017357989.1 MBL fold metallo-hydrolase -
  ACLBKY_RS11465 (ACLBKY_11465) - 2236383..2236556 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  ACLBKY_RS11470 (ACLBKY_11470) - 2236581..2236895 (-) 315 WP_017367597.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40479.93 Da        Isoelectric Point: 9.3646

>NTDB_id=1094746 ACLBKY_RS11435 WP_414834849.1 2232077..2233147(-) (comGA) [Bacillus altitudinis strain Ba 5]
MYGIEYLGQELLEEACRMRASDVHIVPREKEASVSFRVDADLIQQRIIDKKSGERLIAHFKFLSSMDIGERRRPQNGSLA
VMLRRGQVFVRLSTLPTVNDESLVIRILPQDHVPKTKYLSLFPKASARLLSFLKHSHGLILFTGPTNSGKTTTLYSLIQF
AKKHFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELACPFCRETCELYCKLNRPVRRTNVFELLYGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKSTYHRWVYEEANL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1094746 ACLBKY_RS11435 WP_414834849.1 2232077..2233147(-) (comGA) [Bacillus altitudinis strain Ba 5]
TTGTATGGTATTGAATATTTGGGGCAAGAGCTGCTAGAAGAGGCGTGCCGCATGAGAGCATCTGATGTGCATATTGTTCC
GAGAGAAAAGGAAGCTTCAGTCTCTTTTCGTGTAGACGCTGACCTCATTCAGCAGCGGATCATTGACAAAAAGAGCGGAG
AGCGGCTCATTGCTCATTTCAAATTTTTATCTTCTATGGATATTGGTGAAAGAAGGAGACCACAAAATGGGTCATTGGCT
GTGATGCTAAGACGCGGTCAAGTGTTTGTTCGACTCTCTACACTACCGACTGTAAATGATGAAAGTTTAGTGATTCGGAT
TTTACCGCAGGATCATGTGCCGAAAACAAAGTATTTGTCACTGTTCCCGAAGGCTTCAGCGAGATTATTATCGTTTCTGA
AACATTCGCATGGGCTCATTTTATTTACAGGACCAACAAATTCAGGGAAAACGACAACACTTTATTCATTGATTCAGTTT
GCCAAAAAACATTTTAATCGGAATATTATTACCCTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGTTGCAGGTTCA
AGTAAATGAAAAAGCTGGTATCACGTATGCGGCAGGTTTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTTG
GAGAAATAAGAGATGCAGAAACAGCCAGAACAGCTATTAGAGCAGCTTTGACAGGTCATTTAGTCATGAGCACACTGCAC
GCGAAGAATGCAAAAGGAGCTCTTTATCGAATGCTCGAATTTGGTGTGACGATGAATGAACTCGAACAAACAATGGTTGC
TATTGCTGCTCAGCGGTTAATCGAACTCGCATGTCCATTTTGCCGCGAAACGTGTGAGCTTTATTGCAAACTAAATCGGC
CAGTCAGACGAACAAATGTATTTGAATTGCTTTACGGAAAGGAGCTTGGTGAGTGTATCAAAGAGGCAAAAGGAGAATAC
GCTCATTCGTCATACGAAACACTGCAAAGATTAATTCGGAAAGGAGTGGCACTCGGCTATTTATCAAAAAGCACATATCA
TCGCTGGGTTTATGAAGAAGCGAACCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

65.169

100

0.652

Multiple sequence alignment