Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMHYH_RS00040 Genome accession   NZ_CP180212
Coordinates   10223..10750 (+) Length   175 a.a.
NCBI ID   WP_414839397.1    Uniprot ID   -
Organism   Carnobacterium sp. TMP28 isolate 11T.7.20.2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5223..15750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMHYH_RS00030 (ACMHYH_00030) gyrA 7032..9593 (+) 2562 WP_414839396.1 DNA gyrase subunit A -
  ACMHYH_RS00035 (ACMHYH_00035) rpsF 9875..10174 (+) 300 WP_085558933.1 30S ribosomal protein S6 -
  ACMHYH_RS00040 (ACMHYH_00040) ssb 10223..10750 (+) 528 WP_414839397.1 single-stranded DNA-binding protein Machinery gene
  ACMHYH_RS00045 (ACMHYH_00045) rpsR 10784..11020 (+) 237 WP_085558931.1 30S ribosomal protein S18 -
  ACMHYH_RS00050 (ACMHYH_00050) - 11206..13203 (+) 1998 WP_414839398.1 DHH family phosphoesterase -
  ACMHYH_RS00055 (ACMHYH_00055) rplI 13206..13658 (+) 453 WP_414839399.1 50S ribosomal protein L9 -
  ACMHYH_RS00060 (ACMHYH_00060) dnaB 13840..15225 (+) 1386 WP_414839400.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19526.23 Da        Isoelectric Point: 4.9719

>NTDB_id=1094589 ACMHYH_RS00040 WP_414839397.1 10223..10750(+) (ssb) [Carnobacterium sp. TMP28 isolate 11T.7.20.2]
MINNVVLVGRLTKDADLRYTSNGAAVASFTVAVNRQFTNQKGEREADFINCVAWRKTAETLANFTRKGSLIGVEGRIQTR
SYDNQQGQRVYVTEVVVENFSMLESKSANDQRRGSDDTGNTAKTYQQSSTSQTQNNYSQKSAPQNQNSQYPDFGNSDPFE
KSSQPIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1094589 ACMHYH_RS00040 WP_414839397.1 10223..10750(+) (ssb) [Carnobacterium sp. TMP28 isolate 11T.7.20.2]
GTGATTAATAATGTTGTTTTAGTTGGAAGATTAACTAAAGATGCGGATTTGAGATACACTTCAAATGGTGCAGCTGTTGC
ATCGTTTACTGTAGCGGTAAACAGACAGTTTACAAACCAAAAAGGTGAAAGAGAAGCAGATTTCATTAACTGCGTAGCTT
GGAGAAAGACGGCTGAAACATTAGCTAACTTCACTCGTAAGGGATCGTTGATTGGTGTAGAAGGACGTATTCAAACACGT
TCTTATGACAACCAACAAGGACAGCGTGTTTATGTTACTGAAGTAGTTGTTGAGAATTTTTCAATGTTAGAATCTAAGTC
TGCCAACGACCAACGTCGAGGTTCAGATGATACAGGTAATACAGCGAAGACATATCAGCAAAGTTCAACTAGCCAAACAC
AAAATAATTATTCGCAAAAATCAGCTCCTCAAAATCAAAATTCACAATATCCTGATTTTGGAAACTCGGATCCATTCGAA
AAGAGTAGCCAGCCGATTGATATTTCAGATGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.452

100

0.611
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.742

100

0.577
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

60.571

0.377
  ssb Glaesserella parasuis strain SC1401

33.871

100

0.36

Multiple sequence alignment